Browse Element(s) Details


Os.47600.2.S1_x_at

Description gb:AK066747.1
DB_XREF= gi:32976765
TID=Os.47600.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088E05, full insert sequence.
FL= gb:AK066747.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5473010/11Transmembrane amino acid transporter protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47600.2.S1_x_at--800--10411Chr02:33507649..33507673 (25 bp)
TTATACTGAGGACTGCCCTTGTTGC
LOC_Os02g54730
Os.47600.2.S1_x_at--227--2631Chr02:33507621..33507645 (25 bp)
AACCGTGTGCATTGCGTTTCTTATG
LOC_Os02g54730
Os.47600.2.S1_x_at--557--10431NONE
TTATGCCATTTTTCGGTCTCGTGAT
NONE
Os.47600.2.S1_x_at--1057--851Chr02:33506842..33506866 (25 bp)
ATGGCTCTTATTGGATCTCTGTTGA
LOC_Os02g54730
Os.47600.2.S1_x_at--914--6651Chr02:33506728..33506846 (25 bp)
GTTGAGTATACTTGTGGCCGTCATA
LOC_Os02g54730
Os.47600.2.S1_x_at--509--4471Chr02:33506701..33506725 (25 bp)
GCCTGCACTGTGCTTCTTGAAGATT
LOC_Os02g54730
Os.47600.2.S1_x_at--110--5731Chr02:33506550..33506683 (25 bp)
GACTGCCCAGGTCGTTGCAAGTATT
LOC_Os02g54730
Os.47600.2.S1_x_at--723--8271Chr02:33506397..33506421 (25 bp)
GGCATGTCATATCTATTACTCACCC
LOC_Os02g54730
Os.47600.2.S1_x_at--179--11Chr02:33506366..33506390 (25 bp)
CGGTTACGGCGCTCAAAAATGGTCA
LOC_Os02g54730
Os.47600.2.S1_x_at--310--1951Chr02:33506298..33506322 (25 bp)
ACTGTAATTATTCGACCCAACCATG
LOC_Os02g54730
Os.47600.2.S1_x_at--509--751Chr02:33506267..33506291 (25 bp)
ATGTACCTGCATAGCTGCTTGCTTC
LOC_Os02g54730
Target Sequence 
TTATACTGAGGACTGCCCTTGTTGCNTCAACCGTGTGCATTGCGTTTCTTATGCCATTTTTCGGTCTCGTGATGGCTCTT
ATTGGATCTCTGTTGAGTATACTTGTGGCCGTCATAATGCCTGCACTGTGCTTCTTGAAGATTAGGCAAAATAAAGCAAC
GACTGCCCAGGTCGTTGCAAGTATTGGTATAATAATATTGGGCANCATAAGCGCTGCTCTTGGAACATANTCGTCGGTAC
TCAGAATTGTGGAGAACTACTAATTACGAAACCTAGCTCGCGTGCAGTGCAGTTCCCAGCAGGTGAGGCCACAGGCATGT
CATATCTATTACTCACCCCGCTTACGGTTACGGCGCTCAAAAATGGTCAAATATCGTGTGTTTATCAGAATTTTGCTAGA
ATTACCGAGTTCACTGTAATTATTCGACCCAACCATGTAATGCATGTACCTGCATAGCTGCTTGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47600.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis