Browse Element(s) Details


Os.4767.2.S1_x_at

Description gb:NM_192395.1
DB_XREF= gi:34911873
GEN=OSJNBb0032K15.14
TID=Os.4767.2
CNT=11
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4767 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ketol-acid reductoisomerase (OSJNBb0032K15.14), mRNA.
PROD=putative ketol-acid reductoisomerase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4638011/11Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os05g498001/11Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009082biological_processbranched chain family amino acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004455molecular_functionketol-acid reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4767.2.S1_x_at--982--9071Chr01:26722127..26722151 (25 bp)
TGCTTTCCCGATGGGCAACATTGAT
LOC_Os01g46380
Os.4767.2.S1_x_at--464--2891Chr01:26722178..26722202 (25 bp)
AAGGGTGCGGTCAACACGGCCAGCA
LOC_Os01g46380
Os.4767.2.S1_x_at--145--3411Chr01:26722198..26722222 (25 bp)
CAGCAGGTGATCTTGGCCCATTACA
LOC_Os01g46380
Os.4767.2.S1_x_at--1161--131Chr01:26722217..26722241 (25 bp)
ATTACATCCTTTCACTGCTGGAGTG
LOC_Os01g46380
Os.4767.2.S1_x_at--391--1451Chr01:26722379..26722403 (25 bp)
AGAAGGGCCACTCTTACTCGGAGAT
LOC_Os01g46380
Os.4767.2.S1_x_at--757--8851Chr01:26722418..26722442 (25 bp)
TGATCGAGTCTGTGGATTCCCTGAA
LOC_Os01g46380
Os.4767.2.S1_x_at--265--7551Chr01:26722465..26722489 (25 bp)
GTGGCCTTCATGGTTGATAACTGCT
LOC_Os01g46380
Os.4767.2.S1_x_at--927--8132Chr01:26722514..26722538 (25 bp)
GGAAATGGGCGCCACGCTTCGACTA
LOC_Os01g46380
Os.4767.2.S1_x_at--757--5811Chr01:26722545..26722569 (25 bp)
GACCCAACAAGCTTTTGTGACTGTT
LOC_Os01g46380
Os.4767.2.S1_x_at--180--6771Chr01:26722585..26722609 (25 bp)
GTTAATCAAGACCTCATCAGCAATT
LOC_Os01g46380
Os.4767.2.S1_x_at--905--6371Chr01:26722618..26722642 (25 bp)
GATCCCGTCCATAGTGCCATTGAAG
LOC_Os01g46380
Target Sequence 
TGCTTTCCCGATGGGCAACATTGATCAAACACGTATGTGGAAGGTGGGTGAAAGGGTGCGGTCAACACGGCCAGCAGGTG
ATCTTGGCCCATTACATCCTTTCACTGCTGGAGTGTATGTTGCACTTATGATGGCACAGATTGAAGTCCTTAGAAAGAAG
GGCCACTCTTACTCGGAGATCATCAACGAGAGTTTGATCGAGTCTGTGGATTCCCTGAACCCATTCATGCACGCTCGTGG
GGTGGCCTTCATGGTTGATAACTGCTCCACAACAGCCCGGTTGGGATCAAGGAAATGGGCGCCACGCTTCGACTACATCT
TGACCCAACAAGCTTTTGTGACTGTTGACAAGAATGCTCCAGTTAATCAAGACCTCATCAGCAATTTCTTCTCCGATCCC
GTCCATAGTGCCATTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4767.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis