Browse Element(s) Details


Os.47700.1.A1_at

Description gb:CR286943
DB_XREF= gi:44673509
DB_XREF=CR286943
CLONE=y620a09p3
TID=Os.47700.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47700 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197941.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3276011/11bZIP protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32710Os.25202.1.S1_at10/115+19071827..19074457isoamylase-type starch debranching enzyme ISO2, putative, expressed
LOC_Os05g32720Os.52751.1.S1_at11/115+19076997..19082958early-responsive to dehydration protein, putative, expressed
LOC_Os05g32730OsAffx.27123.1.S1_at11/115+19083431..19085092Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os05g32740Os.11575.4.S1_x_at11/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.2.S1_a_at10/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32740Os.11575.3.S1_x_at8/115+19089342..19091244transposon protein, putative, Pong sub-class
LOC_Os05g32750OsAffx.20858.1.S1_x_at10/115+19092111..19092868hypothetical protein
LOC_Os05g32750OsAffx.20858.4.S1_x_at9/115+19092111..19092868hypothetical protein
LOC_Os05g32760OsAffx.14927.1.S1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32760Os.47700.1.A1_at11/115+19095361..19100596bZIP protein, putative, expressed
LOC_Os05g32770OsAffx.27124.1.S1_at7/115+19111120..19113929hypothetical protein
LOC_Os05g32770OsAffx.24473.1.S1_at6/115+19111120..19113929hypothetical protein
LOC_Os05g32780OsAffx.27125.1.S1_at11/115+19120545..19121846hypothetical protein
LOC_Os05g32790OsAffx.14928.1.S1_at11/115+19124913..19125310hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47700.1.A1_at--855--9591Chr05:19100002..19100026 (25 bp)
TCATGCAGGATCAGGGTAACAACTA
LOC_Os05g32760
Os.47700.1.A1_at--766--1051Chr05:19100014..19100038 (25 bp)
AGGGTAACAACTAGCTGAAGAGCAT
LOC_Os05g32760
Os.47700.1.A1_at--1067--9991Chr05:19100025..19100049 (25 bp)
TAGCTGAAGAGCATGTACAGGAGTT
LOC_Os05g32760
Os.47700.1.A1_at--388--2111Chr05:19100041..19100065 (25 bp)
ACAGGAGTTAGGATGCTAGCGAAAA
LOC_Os05g32760
Os.47700.1.A1_at--1023--1611Chr05:19100058..19100082 (25 bp)
AGCGAAAATTCTATCAACTGTTGTA
LOC_Os05g32760
Os.47700.1.A1_at--231--10371Chr05:19100107..19100131 (25 bp)
TTTTTTGCGGTATGTGTAGCTCTTC
LOC_Os05g32760
Os.47700.1.A1_at--1105--4671Chr05:19100113..19100137 (25 bp)
GCGGTATGTGTAGCTCTTCAGACGA
LOC_Os05g32760
Os.47700.1.A1_at--95--6971Chr05:19100122..19100146 (25 bp)
GTAGCTCTTCAGACGAGAACTGGGT
LOC_Os05g32760
Os.47700.1.A1_at--62--8891Chr05:19100146..19100170 (25 bp)
TGAGTGAGGTGGTCTGTCTATTGAA
LOC_Os05g32760
Os.47700.1.A1_at--711--7731Chr05:19100153..19100177 (25 bp)
GGTGGTCTGTCTATTGAAATTTGTT
LOC_Os05g32760
Os.47700.1.A1_at--680--2251Chr05:19100169..19100193 (25 bp)
AAATTTGTTGAGGTAGTTTGGCATG
LOC_Os05g32760
Target Sequence 
TCATGCAGGATCAGGGTAACAACTAGCTGAAGAGCATGTACAGGAGTTAGGATGCTAGCGAAAATTCTATCAACTGTTGT
AANGGTTATGTTGTTTCCCTCCCCTTTTTTTGCGGTATGTGTAGCTCTTCAGACGAGAACTGGGTGAGTGAGGTGGTCTG
TCTATTGAAATTTGTTGAGGTAGTTTGGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47700.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis