Browse Element(s) Details


Os.47705.1.A1_at

Description gb:CB619428
DB_XREF= gi:29614415
DB_XREF=OSIIEa03P18.r
CLONE=OSIIEa03P18
TID=Os.47705.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47705 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47811 (A.thaliana) T47811 hypothetical protein F24G16.140 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g236809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23630OsAffx.23355.1.S1_s_at11/111+13274139..13276948Transcription initiation factor IID, 18kD subunit family protein
LOC_Os01g23640Os.7156.1.S1_at11/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23640OsAffx.18527.1.S1_at8/111+13278822..13287747Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g23650OsAffx.18389.2.S1_at11/111+13292459..13292797hypothetical protein
LOC_Os01g23660NANA1+13294254..13294856hypothetical protein
LOC_Os01g23670NANA1+13296915..13297872retrotransposon protein, putative, unclassified
LOC_Os01g23680Os.19014.1.S1_at10/111+13301776..13306281expressed protein
LOC_Os01g23680Os.47705.1.A1_at9/111+13301776..13306281expressed protein
LOC_Os01g23690OsAffx.23356.1.S1_at11/111+13309905..13310644hypothetical protein
LOC_Os01g23700NANA1+13322756..13323202hypothetical protein
LOC_Os01g23710Os.17912.2.S1_x_at11/111+13325360..13328373expressed protein
LOC_Os01g23710OsAffx.20377.1.S1_x_at6/111+13325360..13328373expressed protein
LOC_Os01g23710Os.46681.1.S1_at1/111+13325360..13328373expressed protein
LOC_Os01g23730OsAffx.23357.1.S1_at11/111+13331049..13331852retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47705.1.A1_at--667--2831Chr01:13302887..13302911 (25 bp)
AAGTATCCGACAGTTCTTAGAAGCT
LOC_Os01g23680
Os.47705.1.A1_at--844--3431Chr01:13302877..13302901 (25 bp)
CAGTTCTTAGAAGCTGACCAGACCT
LOC_Os01g23680
Os.47705.1.A1_at--1156--10411Chr01:13302871..13302895 (25 bp)
TTAGAAGCTGACCAGACCTTCACCG
LOC_Os01g23680
Os.47705.1.A1_at--812--3391Chr01:13302859..13302883 (25 bp)
CAGACCTTCACCGTAACTTTTATTG
LOC_Os01g23680
Os.47705.1.A1_at--283--9311Chr01:13302852..13302876 (25 bp)
TCACCGTAACTTTTATTGAATTCCA
LOC_Os01g23680
Os.47705.1.A1_at--600--5191Chr01:13302835..13302859 (25 bp)
GAATTCCAACAATGTACCTCTGCAG
LOC_Os01g23680
Os.47705.1.A1_at--492--2451Chr01:13302828..13302852 (25 bp)
AACAATGTACCTCTGCAGAAAACAT
LOC_Os01g23680
Os.47705.1.A1_at--13--5531NONE
GAAAACATCATTGTTTTGCTTTACC
NONE
Os.47705.1.A1_at--1156--2691Chr01:13302781..13302805 (25 bp)
AAGCTAATCTTTTGTCCATATGGTA
LOC_Os01g23680
Os.47705.1.A1_at--655--9551Chr01:13302774..13302798 (25 bp)
TCTTTTGTCCATATGGTAAGCTGAA
LOC_Os01g23680
Os.47705.1.A1_at--654--3831NONE
CTGAATATGATTCGGTGGGATTTTG
NONE
Target Sequence 
AAGTATCCGACAGTTCTTAGAAGCTGACCAGACCTTCACCGTAACTTTTATTGAATTCCAACAATGTACCTCTGCAGAAA
ACATCATTGTTTTGCTTTACCATGTAAAGCTAATCTTTTGTCCATATGGTAAGCTGAATATGATTCGGTGGGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47705.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis