Browse Element(s) Details


Os.47711.1.A1_s_at

Description gb:CB660572
DB_XREF= gi:29664297
DB_XREF=OSJNEd02H22.r
CLONE=OSJNEd02H22
TID=Os.47711.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47711 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g319206/11hypothetical protein
LOC_Os02g199505/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47711.1.A1_s_at--796--6672Chr02:18856753..18856777 (25 bp)
GTTGCTGTCCAGAGTAAAGATTTTC
LOC_Os02g31920
Os.47711.1.A1_s_at--1115--4912Chr02:18856783..18856807 (25 bp)
GCTTGCGCTAAAGGGCAGATGCCTC
LOC_Os02g31920
Os.47711.1.A1_s_at--766--2872Chr02:18856793..18856817 (25 bp)
AAGGGCAGATGCCTCATGGCTGACA
LOC_Os02g31920
Os.47711.1.A1_s_at--1070--5032Chr02:18856797..18856821 (25 bp)
GCAGATGCCTCATGGCTGACAATCT
LOC_Os02g31920
Os.47711.1.A1_s_at--150--9193Chr08:14153945..14153969 (25 bp)
TGCCTCATGGCTGACAATCTACAGA
NONE
Os.47711.1.A1_s_at--155--7954Chr08:14154062..14154086 (25 bp)
GGATTTGGAGATTGCTCAGGAGCTA
NONE
Os.47711.1.A1_s_at--342--2072Chr02:18856985..18857009 (25 bp)
ACTTGGCTGATTGGCGGATGGCTTC
NONE
Os.47711.1.A1_s_at--527--8694Chr08:14154233..14154257 (25 bp)
TGTGCAGCTCTTTGGTGACATCAAA
NONE
Os.47711.1.A1_s_at--286--3193Chr02:18857127..18857151 (25 bp)
CAATCTGGAGGGAGGCAGGCTTCAT
NONE
Os.47711.1.A1_s_at--745--913Chr02:18857139..18857163 (25 bp)
AGGCAGGCTTCATGGTAGGCGAAAA
NONE
Os.47711.1.A1_s_at--668--8273Chr02:18857144..18857168 (25 bp)
GGCTTCATGGTAGGCGAAAAACGAT
NONE
Target Sequence 
GTTGCTGTCCAGAGTAAAGATTTTCATGTGGCTTGCGCTAAAGGGCAGATGCCTCATGGCTGACAATCTACAGAAAAGAG
GATTTGGAGATTGCTCAGGAGCTAGGTGAATGTTGGCTTTCCGCTTCCCAGTGACCTCAATGTAGACTTGGCTGATTGGC
GGATGGCTTCAAGGAGAAGCTTCAGAGATTATCTCAGAAAAGTTTTCGGTACACTCTTCTTCAGAGATTGTCTCAGCAAG
TTGTATGGTTGTGCAGCTCTTTGGTGACATCAAAGAAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAAAAAC
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47711.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis