Browse Element(s) Details


Os.47744.1.S1_at

Description gb:AK098927.1
DB_XREF= gi:32984136
TID=Os.47744.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013008I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013008I04, full insert sequence.
FL= gb:AK072180.1 gb:AK098927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0121611/11phosphatidylserine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein

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Gene Ontology Classification
GO idTypeName
GO:0004609molecular_functionphosphatidylserine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47744.1.S1_at--453--10091Chr03:121472..121496 (25 bp)
TAGGATCAGGGTAGGAGAAGCCATT
LOC_Os03g01216
Os.47744.1.S1_at--973--2651Chr03:121489..121513 (25 bp)
AAGCCATTGGGCGATGGACATCGCG
LOC_Os03g01216
Os.47744.1.S1_at--381--9511Chr03:121546..121570 (25 bp)
TCTCTCTATATATCTTGTGTTAACA
LOC_Os03g01216
Os.47744.1.S1_at--189--7991Chr03:121575..121599 (25 bp)
GGATGATGAGTATCGTCGTCGTATC
LOC_Os03g01216
Os.47744.1.S1_at--796--10151Chr03:121585..121609 (25 bp)
TATCGTCGTCGTATCAATGTCTCTT
LOC_Os03g01216
Os.47744.1.S1_at--649--6891Chr03:121595..121619 (25 bp)
GTATCAATGTCTCTTTCGTTTTTAT
LOC_Os03g01216
Os.47744.1.S1_at--684--6811Chr03:121612..121636 (25 bp)
GTTTTTATTTTTGAGCTGCGGTGCC
LOC_Os03g01216
Os.47744.1.S1_at--24--7791Chr03:121631..121655 (25 bp)
GGTGCCGGTGCATGCTACTACAAAA
LOC_Os03g01216
Os.47744.1.S1_at--1086--2331Chr03:121654..121678 (25 bp)
AAAGACTTGTATCTTCTGTAGGGAA
LOC_Os03g01216
Os.47744.1.S1_at--1094--5531Chr03:121685..121709 (25 bp)
GAAACTATTGCCATTTTGACTTGAC
LOC_Os03g01216
Os.47744.1.S1_at--937--5951Chr03:121725..121749 (25 bp)
GAGAATGATATTCTTGTTACTCAGC
LOC_Os03g01216
Target Sequence 
TAGGATCAGGGTAGGAGAAGCCATTGGGCGATGGACATCGCGGGAATGAATGAATGAAGGCATGGCATGGCATCTCTCTC
TATATATCTTGTGTTAACATGATGGATGATGAGTATCGTCGTCGTATCAATGTCTCTTTCGTTTTTATTTTTGAGCTGCG
GTGCCGGTGCATGCTACTACAAAAAGACTTGTATCTTCTGTAGGGAAGTAAAGGAAACTATTGCCATTTTGACTTGACTT
GGGCGATTTGAGNGAGAATGATATTCTTGTTACTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis