Browse Element(s) Details


Os.47778.1.A1_s_at

Description gb:AU174633
DB_XREF= gi:13420543
DB_XREF=AU174633
CLONE=F10150
TID=Os.47778.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47778 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3364011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed
LOC_Os04g33690Os.53585.1.S1_at11/114+20210709..20218358Sec23/Sec24 trunk domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47778.1.A1_s_at--393--8791Chr04:20189663..20189687 (25 bp)
TGTTAGCTCTCATCGCCATTGCATC
LOC_Os04g33640
Os.47778.1.A1_s_at--42--4451Chr04:20189677..20189701 (25 bp)
GCCATTGCATCGATCACTCTCATCT
LOC_Os04g33640
Os.47778.1.A1_s_at--577--6071Chr04:20189710..20189734 (25 bp)
GAGTATATACTTTTGTCCAGTTCAG
LOC_Os04g33640
Os.47778.1.A1_s_at--1055--10091Chr04:20189721..20189745 (25 bp)
TTTGTCCAGTTCAGTAAAGTAGAGT
LOC_Os04g33640
Os.47778.1.A1_s_at--708--6091Chr04:20189742..20189766 (25 bp)
GAGTAAAGGTGCAGCATCTCTTGCT
LOC_Os04g33640
Os.47778.1.A1_s_at--726--451Chr04:20189757..20189781 (25 bp)
ATCTCTTGCTGCTGAAGATTCCCAT
LOC_Os04g33640
Os.47778.1.A1_s_at--417--2691Chr04:20189771..20189795 (25 bp)
AAGATTCCCATAGAAGAAAGCAAGG
LOC_Os04g33640
Os.47778.1.A1_s_at--87--7671Chr04:20190049..20190073 (25 bp)
GGGATGCTTCGGGAGCACAAGATCA
LOC_Os04g33640
Os.47778.1.A1_s_at--422--5951Chr04:20190061..20190085 (25 bp)
GAGCACAAGATCATTCAGATTTCAG
LOC_Os04g33640
Os.47778.1.A1_s_at--698--6511Chr04:20190078..20190102 (25 bp)
GATTTCAGAACGATAGGATCGCCCA
LOC_Os04g33640
Os.47778.1.A1_s_at--151--4911Chr04:20190196..20190220 (25 bp)
GCTTCGAGATGATACAAGTCCAGAT
LOC_Os04g33640
Target Sequence 
TGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTNATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAG
AGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCA
GATTTCAGAACGATAGGATCGCCCANGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATT
TGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47778.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis