Browse Element(s) Details

Os.4781.1.S1_a_at

Description

gb:AK066464.1
DB_XREF= gi:32976482
TID=Os.4781.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075M21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067N02, full insert sequence.
FL= gb:AK066464.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g23900	11/11	expressed protein
LOC_Os03g23920	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g23860	NA	NA	3	+	13518449..13524005	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23870	Os.10731.1.A1_a_at	11/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	Os.38764.1.S1_x_at	4/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	Os.45173.1.S1_x_at	3/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	Os.48015.1.A1_x_at	2/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	OsAffx.8244.1.S1_at	1/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	Os.10731.2.A1_at	1/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	OsAffx.20440.1.S1_x_at	1/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23870	OsAffx.20440.2.S1_x_at	1/11	3	+	13526840..13530031	retrotransposon protein, putative, unclassified
LOC_Os03g23880	OsAffx.8244.1.S1_at	1/11	3	+	13532611..13533168	retrotransposon protein, putative, unclassified
LOC_Os03g23890	NA	NA	3	+	13539185..13539733	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g23900	Os.4781.1.S1_a_at	11/11	3	+	13544217..13546530	expressed protein
LOC_Os03g23909	Os.18521.1.A1_at	11/11	3	+	13549836..13553678	U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23920	Os.4781.1.S1_a_at	11/11	3	+	13553736..13556144	expressed protein
LOC_Os03g23929	Os.18521.1.A1_at	6/11	3	+	13559464..13563099	U4/U6 small nuclear ribonucleoprotein PRP4, putative, expressed
LOC_Os03g23940	OsAffx.25201.1.S1_s_at	11/11	3	+	13564078..13565271	expressed protein
LOC_Os03g23950	Os.5414.1.S1_at	11/11	3	+	13565574..13571924	Adapter-related protein complex 1 beta 1 subunit, putative, expressed
LOC_Os03g23950	Os.52410.1.S1_x_at	5/11	3	+	13565574..13571924	Adapter-related protein complex 1 beta 1 subunit, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4781.1.S1_a_at--222--347	2	Chr03:13554109..13554133 (25 bp)	CAGTGGACGGCTCGTGATGCTGGAG	LOC_Os03g23920
Os.4781.1.S1_a_at--325--635	2	Chr03:13554094..13554118 (25 bp)	GATGCTGGAGCAGACTTCATTTTGC	LOC_Os03g23920
Os.4781.1.S1_a_at--915--593	2	Chr03:13554087..13554111 (25 bp)	GAGCAGACTTCATTTTGCCAGGCTG	LOC_Os03g23920
Os.4781.1.S1_a_at--750--1069	2	Chr03:13554073..13554097 (25 bp)	TTGCCAGGCTGCTGCTTACTTGGTA	LOC_Os03g23920
Os.4781.1.S1_a_at--1077--89	2	Chr03:13554068..13554092 (25 bp)	AGGCTGCTGCTTACTTGGTAGGGTA	LOC_Os03g23920
Os.4781.1.S1_a_at--861--381	2	Chr03:13554062..13554086 (25 bp)	CTGCTTACTTGGTAGGGTAGGGATC	LOC_Os03g23920
Os.4781.1.S1_a_at--249--769	2	Chr03:13554048..13554072 (25 bp)	GGGTAGGGATCGTATTCTTCGTGCC	LOC_Os03g23920
Os.4781.1.S1_a_at--996--1007	2	Chr03:13554045..13554069 (25 bp)	TAGGGATCGTATTCTTCGTGCCGTC	LOC_Os03g23920
Os.4781.1.S1_a_at--18--403	2	Chr03:13554024..13554048 (25 bp)	CGTCTTGCTGTTTTGCAAGCTGACT	LOC_Os03g23920
Os.4781.1.S1_a_at--501--1039	2	Chr03:13554014..13554038 (25 bp)	TTTTGCAAGCTGACTCTTTAGGTTT	LOC_Os03g23920
Os.4781.1.S1_a_at--382--161	2	Chr03:13554007..13554031 (25 bp)	AGCTGACTCTTTAGGTTTTATATTG	LOC_Os03g23920

Target Sequence

CAGTGGACGGCTCGTGATGCTGGAGCAGACTTCATTTTGCCAGGCTGCTGCTTACTTGGTAGGGTAGGGATCGTATTCTT
CGTGCCGTCTTGCTGTTTTGCAAGCTGACTCTTTAGGTTTTATATTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis