Browse Element(s) Details


Os.47888.1.S1_at

Description gb:AK109214.1
DB_XREF= gi:32994423
TID=Os.47888.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47888 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D08, full insert sequence.
FL= gb:AK109214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3867011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38620Os.54125.1.S1_at11/119+22212010..22217764NADPH-cytochrome P450 reductase, putative, expressed
LOC_Os09g38630OsAffx.30191.1.S1_at11/119+22219929..22221506IBR domain containing protein
LOC_Os09g38640OsAffx.6519.1.S1_at11/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38640OsAffx.2477.1.S1_x_at1/119+22222559..22224335IBR domain containing protein, expressed
LOC_Os09g38650Os.56200.1.S1_at11/119+22224746..22226350expressed protein
LOC_Os09g38660Os.51230.1.S1_at11/119+22229812..22232304expressed protein
LOC_Os09g38670OsAffx.30192.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670OsAffx.30192.1.S1_s_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38670Os.47888.1.S1_at11/119+22234565..22235488Thioredoxin family protein, expressed
LOC_Os09g38680OsAffx.18048.1.S1_at11/119+22237146..22237945hypothetical protein
LOC_Os09g38690Os.11336.1.S1_at11/119+22238962..22243005major facilitator superfamily protein, expressed
LOC_Os09g38700Os.23291.1.A1_at4/119+22243503..22248101strubbelig receptor family 5, putative, expressed
LOC_Os09g38710Os.53664.1.S1_s_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38710Os.53664.1.S1_at11/119+22248485..22253736HEAT repeat family protein, expressed
LOC_Os09g38720OsAffx.30193.1.S1_at11/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38720Os.46646.1.S1_x_at4/119+22255566..22259443mTERF family protein, expressed
LOC_Os09g38730Os.54799.1.A1_at5/119+22260127..2226147326S proteasome subunit P45 family protein

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005829cellular_componentcytosol
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47888.1.S1_at--84--2071Chr09:22234918..22234942 (25 bp)
ACATATATAATCCAATCCAATTCAG
LOC_Os09g38670
Os.47888.1.S1_at--321--571Chr09:22234927..22234951 (25 bp)
ATCCAATCCAATTCAGATTTACATG
LOC_Os09g38670
Os.47888.1.S1_at--25--591Chr09:22234932..22234956 (25 bp)
ATCCAATTCAGATTTACATGTGATG
LOC_Os09g38670
Os.47888.1.S1_at--698--2111Chr09:22234947..22234971 (25 bp)
ACATGTGATGTGATCGATCGACGCA
LOC_Os09g38670
Os.47888.1.S1_at--186--8691Chr09:22234950..22234974 (25 bp)
TGTGATGTGATCGATCGACGCATTC
LOC_Os09g38670
Os.47888.1.S1_at--524--8871Chr09:22234952..22234976 (25 bp)
TGATGTGATCGATCGACGCATTCAT
LOC_Os09g38670
Os.47888.1.S1_at--1076--771Chr09:22234954..22234978 (25 bp)
ATGTGATCGATCGACGCATTCATGC
LOC_Os09g38670
Os.47888.1.S1_at--51--7391Chr09:22234956..22234980 (25 bp)
GTGATCGATCGACGCATTCATGCAT
LOC_Os09g38670
Os.47888.1.S1_at--843--6393Chr09:22234958..22234982 (25 bp)
GATCGATCGACGCATTCATGCATGC
LOC_Os09g38670
Os.47888.1.S1_at--1063--513Chr09:22234959..22234983 (25 bp)
ATCGATCGACGCATTCATGCATGCA
LOC_Os09g38670
Os.47888.1.S1_at--728--10111Chr09:22235003..22235027 (25 bp)
TATGAATGATCAATCAGGTGGTGCT
LOC_Os09g38670
Target Sequence 
ACATATATAATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATAT
TGAAATATGAATGATCAATCAGGTGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis