Browse Element(s) Details


Os.47981.1.S1_at

Description gb:AK061599.1
DB_XREF= gi:32971617
TID=Os.47981.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A09, full insert sequence.
FL= gb:AK061599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4692011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46860Os.54959.1.S1_at11/113+26454359..26458705Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g46870OsAffx.25588.1.S1_at11/113+26461558..26463281expressed protein
LOC_Os03g46884Os.5846.1.S1_at1/113+26466840..26469478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46900OsAffx.25589.1.S1_at11/113+26472538..26474763hypothetical protein
LOC_Os03g46910Os.25127.1.S1_at11/113+26475794..26479888Pyruvate kinase isozyme A, chloroplast precursor, putative, expressed
LOC_Os03g46920Os.47981.1.S1_at11/113+26480527..26483568expressed protein
LOC_Os03g46930OsAffx.25590.1.S1_at11/113+26491113..26491588hypothetical protein
LOC_Os03g46940Os.10192.1.S1_at1/113+26492430..26492660expressed protein
LOC_Os03g46950Os.19579.1.S1_at11/113+26496440..26498276expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47981.1.S1_at--282--4791Chr03:26481174..26481198 (25 bp)
GCTCCGGCGCTTCGATGTATAGCAG
LOC_Os03g46920
Os.47981.1.S1_at--451--1871Chr03:26481105..26481129 (25 bp)
ACGAGAGCCTGAGCCTTGATCCAGT
LOC_Os03g46920
Os.47981.1.S1_at--322--4111Chr03:26480842..26480866 (25 bp)
TCAGGTTAAATCACCGGAGGCGTAA
LOC_Os03g46920
Os.47981.1.S1_at--704--4531Chr03:26480808..26480832 (25 bp)
GCCCCAGTGCTAACTACGATCTGTA
LOC_Os03g46920
Os.47981.1.S1_at--1107--7631Chr03:26480782..26480806 (25 bp)
GGGACCTAACTATCAGCTTGATTTT
LOC_Os03g46920
Os.47981.1.S1_at--1072--1491Chr03:26480757..26480781 (25 bp)
AGCACTTGCTGCTTTAGCTTAACTG
LOC_Os03g46920
Os.47981.1.S1_at--187--9111Chr03:26480734..26480758 (25 bp)
TGCTCCTCAGCTTTCATTGACATTG
LOC_Os03g46920
Os.47981.1.S1_at--818--4871Chr03:26480710..26480734 (25 bp)
GCTTTAGCACTTGAATTCGACTGAT
LOC_Os03g46920
Os.47981.1.S1_at--364--3871Chr03:26480595..26480619 (25 bp)
CTGTTGAGATGACTGCTTTCGTGCA
LOC_Os03g46920
Os.47981.1.S1_at--106--4891Chr03:26480570..26480594 (25 bp)
GCTTTGTTATGTTTGCTACCTGAAT
LOC_Os03g46920
Os.47981.1.S1_at--663--951Chr03:26480529..26480553 (25 bp)
AGGACATCGCTTTGTTACCATTCTG
LOC_Os03g46920
Target Sequence 
GCTCCGGCGCTTCGATGTATAGCAGCAGCTTGTCTTCTGGCTATGGCAGGAGGAAGAGTGCCAANGAGGACGAGAGCCTG
AGCCTTGATCCAGTNTCCAGGAGGGATTNTGCCGCGCAACCCACNTCGTCCTATGGTAGTTTCACCACCTNANCGAGAAN
GATNCCCTGCNCAAGNAAGAGANAACAAGGATGATGAGGCGGTGACCACCCCAGTCCGGCNTTCCAGCAGGTTGAGGAAT
CAGGTTAAATCACCGGAGGCGTAAAGATGGNCAGCCCCAGTGCTAACTACGATCTGTANGGGACCTAACTATCAGCTTGA
TTTTAGCACTTGCTGCTTTAGCTTAACTGCTCCTCAGCTTTCATTGACATTGCTTTAGCACTTGAATTCGACTGATGTAT
GATGATAAATAACAGCTCTCTGCTGTTCTTTTCATCGAAAAATGGATTACGATTTCTGTTTTTTCCCCCCTTCTTTTTAG
TTGTGTCTGTTGAGATGACTGCTTTCGTGCAGCTTTGTTATGTTTGCTACCTGAATATGAATGTATTAATCCAGGACATC
GCTTTGTTACCATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis