Browse Element(s) Details


Os.48003.1.A1_at

Description gb:NM_191939.1
DB_XREF= gi:34910961
GEN=OSJNBb0063G05.26
TID=Os.48003.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48003 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBb0063G05.26), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4784011/11S-locus-like receptor protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47800Os.32955.2.S1_x_at11/111+27684185..27690000expressed protein
LOC_Os01g47800Os.32955.1.A1_at11/111+27684185..27690000expressed protein
LOC_Os01g47810NANA1+27693165..27695552S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47820OsAffx.2268.1.S1_at11/111+27702153..27704572S-locus-like receptor protein kinase, putative, expressed
LOC_Os01g47830NANA1+27707419..27709605retrotransposon protein, putative, unclassified
LOC_Os01g47840Os.48003.1.A1_at11/111+27713419..27715764S-locus-like receptor protein kinase, putative
LOC_Os01g47850OsAffx.1674.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47850OsAffx.2022.1.S1_at1/111+27720686..27723126transposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.3.S1_x_at2/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.4.S1_x_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47860OsAffx.21171.1.S1_at1/111+27723972..27726568retrotransposon protein, putative, unclassified
LOC_Os01g47870Os.49936.2.A1_at3/111+27727574..27729593hypothetical protein
LOC_Os01g47870Os.33601.3.S1_x_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47870OsAffx.15708.1.S1_at1/111+27727574..27729593hypothetical protein
LOC_Os01g47880NANA1+27732114..27733664retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47890Os.27189.2.S1_at11/111+27736384..27739688retrotransposon protein, putative, unclassified
LOC_Os01g47890OsAffx.22711.4.A1_x_at1/111+27736384..27739688retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48003.1.A1_at--161--5891Chr01:27715168..27715192 (25 bp)
GAGCGATTGCTTGCATGGAGCCAAC
LOC_Os01g47840
Os.48003.1.A1_at--698--8451Chr01:27715183..27715207 (25 bp)
TGGAGCCAACGGTTCAAAATAGCGT
LOC_Os01g47840
Os.48003.1.A1_at--304--10151Chr01:27715231..27715255 (25 bp)
TATCTCCATCACGAGTGCCTAGAGT
LOC_Os01g47840
Os.48003.1.A1_at--1100--1351Chr01:27715281..27715305 (25 bp)
AGAGAACATACTTCTGACCAGAGAT
LOC_Os01g47840
Os.48003.1.A1_at--559--6971Chr01:27715358..27715382 (25 bp)
GTACCAGTTTAAACTTCACGCATAT
LOC_Os01g47840
Os.48003.1.A1_at--289--791Chr01:27715413..27715437 (25 bp)
ATGGGCGTTGAACTCACCAATCAAT
LOC_Os01g47840
Os.48003.1.A1_at--567--4831Chr01:27715536..27715560 (25 bp)
GCTCAGAGATTTTGTGCAGGTCATG
LOC_Os01g47840
Os.48003.1.A1_at--740--7591Chr01:27715615..27715639 (25 bp)
GGGCATTTCAATTCTGAGCAAGCAA
LOC_Os01g47840
Os.48003.1.A1_at--964--8191Chr01:27715650..27715674 (25 bp)
GGAAGTTGCTATATCTTGTCTTGAA
LOC_Os01g47840
Os.48003.1.A1_at--430--5531Chr01:27715679..27715703 (25 bp)
GAAACAGCAGGCCTACAATGGATGA
LOC_Os01g47840
Os.48003.1.A1_at--572--2431Chr01:27715710..27715734 (25 bp)
AAAAGCCTTCCTGGCATGTGATGAC
LOC_Os01g47840
Target Sequence 
GAGCGATTGCTTGCATGGAGCCAACGGTTCAAAATAGCGTTGGGTACAGCTAGAGGTTTGGCCTATCTCCATCACGAGTG
CCTAGAGTGGGTTGTCCATTGTGATGTAAAACCAGAGAACATACTTCTGACCAGAGATTTTGAAGTGAAGATAGCAGACT
TTGGACTGGCCAAACTCTCAAAGAGAGACAGTACCAGTTTAAACTTCACGCATATGAGGGGTACAATGGGCTACATGGCA
CCAGAATGGGCGTTGAACTCACCAATCAATGCAAAGGTTGATGTCTACAGTTATGGTGTTGTTCTTCTTGAGATTGTAAC
TGGAAGCAGGATATCAAGCGGGATAAAAGTGGATGGGAGGGAGGTGGAGCTCAGAGATTTTGTGCAGGTCATGAAACATA
TTCTGGCTACTGGGGACGTCAAGGATGTAATTGATACTAGACTGAATGGGCATTTCAATTCTGAGCAAGCAAAGGTAATG
GTGGAAGTTGCTATATCTTGTCTTGAAGAAAGAAACAGCAGGCCTACAATGGATGAAATTGCAAAAGCCTTCCTGGCATG
TGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48003.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis