Browse Element(s) Details


Os.48064.1.S1_at

Description gb:AK108738.1
DB_XREF= gi:32993947
TID=Os.48064.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D12, full insert sequence.
FL= gb:AK108738.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2678010/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26760OsAffx.30045.1.S1_at11/119+16251172..16256557DNA repair metallo-beta-lactamase family protein
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48064.1.S1_at--567--9311Chr09:16273204..16273224 (21 bp)
TCCCGATCTGCCGATTGCAAGGAGG
LOC_Os09g26780
Os.48064.1.S1_at--559--6191Chr09:16273183..16273207 (25 bp)
GAGGAACTCGCTCCATAGGTTTCTC
LOC_Os09g26780
Os.48064.1.S1_at--144--5111Chr09:16273017..16273041 (25 bp)
GCAAATGCTCCATACCAAGCTAACT
LOC_Os09g26780
Os.48064.1.S1_at--1101--2571Chr09:16272966..16272990 (25 bp)
AACGGTGACAAATCTTGGCTTGGGT
LOC_Os09g26780
Os.48064.1.S1_at--936--5831Chr09:16272903..16272927 (25 bp)
GACCTCTTAGCTTACAGTTCACTGT
LOC_Os09g26780
Os.48064.1.S1_at--197--2691Chr09:16272735..16272759 (25 bp)
AAGCTGGTGGTTAATTCTGCCTGAC
LOC_Os09g26780
Os.48064.1.S1_at--814--3851Chr09:16272715..16272739 (25 bp)
CTGACCATTGGCATCCTGGAATATA
LOC_Os09g26780
Os.48064.1.S1_at--244--6731Chr09:16272666..16272690 (25 bp)
GTTCTCCACATTGTTTGCTGCTGGA
LOC_Os09g26780
Os.48064.1.S1_at--672--5871Chr09:16272643..16272667 (25 bp)
GAGCCGTATGCTCACTGCAGTTTAT
LOC_Os09g26780
Os.48064.1.S1_at--1061--6911NONE
GTATGTGCAAATTCCTCATTTCTCG
NONE
Os.48064.1.S1_at--1102--9591Chr09:16272547..16272571 (25 bp)
TCATTTCTCGTTCGGTTTCGCCGTA
LOC_Os09g26780
Target Sequence 
TCCCGATCTGCCGATTGCAAGGAGGAACTCGCTCCATAGGTTTCTCGAGAAGAGAAAGGGCAGGATGAATGCAAATGCTC
CATACCAAGCTAACTGCACCGCTGCACCGTCCAAGCAAGCTAACGGTGACAAATCTTGGCTTGGGTTTGGCCAAGAGATG
ACAATAAAGCAGGAGATATGATATGACCTCTTAGCTTACAGTTCACTGTCAAGTGTCAAGTGATCTGTGGGGAAGAGATG
CGTGGTTGGCTGGTTGCTAGTGCTAGTGTATTCCCCCGTAGCTTCAAAGCATGAATAATTACTCAATACTACTACATTAC
TACTAGTAAGAACTTAATCAATNCTAGGAATCAAGCTGGTGGTTAATTCTGCCTGACCATTGGCATCCTGGAATATATAT
AAGCACACACACGGGTTGNTTGTTCTCCACATTGTTTGCTGCTGGAGCCGTATGCTCACTGCAGTTTATATCTGTCTAGN
TGGNTACCCACCTCAGCCTCACCANGTTTCGGGAATAAACACTGTGTATGTGCAAATTCCTCATTTCTCGTTCGGTTTCG
CCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis