Browse Element(s) Details


Os.48081.1.S1_at

Description gb:AK070529.1
DB_XREF= gi:32980553
TID=Os.48081.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full insert sequence.
FL= gb:AK101000.1 gb:AK070529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0323011/11Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g030801/11Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0009409biological_processresponse to cold
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48081.1.S1_at--1120--3191Chr07:1276423..1276447 (25 bp)
CAATGAGAGGGCATATGAGGCCAAA
LOC_Os07g03230
Os.48081.1.S1_at--1130--8471Chr07:1276438..1276462 (25 bp)
TGAGGCCAAAACTGGTGGTACCCTT
LOC_Os07g03230
Os.48081.1.S1_at--519--3891Chr07:1276449..1276473 (25 bp)
CTGGTGGTACCCTTGAGGGAGCACC
LOC_Os07g03230
Os.48081.1.S1_at--513--7491Chr07:1276488..1276512 (25 bp)
GTGGTGATGGTCAGGACTCATCCAA
LOC_Os07g03230
Os.48081.1.S1_at--780--7112Chr07:1276497..1276521 (25 bp)
GTCAGGACTCATCCAACTTGGGCAA
LOC_Os07g03230
Os.48081.1.S1_at--722--7171Chr07:1276570..1276594 (25 bp)
GTCTGGATACTCAGGCAGAGTTGGA
LOC_Os07g03230
Os.48081.1.S1_at--952--6411Chr07:1276881..1276905 (25 bp)
GATCTCTTAATTTCGTTACAGCTTA
LOC_Os07g03230
Os.48081.1.S1_at--730--9871Chr07:1276904..1276928 (25 bp)
TACAGTTTAAATTTGTCGGACACTT
LOC_Os07g03230
Os.48081.1.S1_at--1038--9431Chr07:1276919..1276943 (25 bp)
TCGGACACTTGACAAAGAGCTCTCT
LOC_Os07g03230
Os.48081.1.S1_at--976--4331Chr07:1276952..1276976 (25 bp)
CCATGGGAGTGAGGACAGTATTCAC
LOC_Os07g03230
Os.48081.1.S1_at--73--3031Chr07:1276992..1277016 (25 bp)
AATGCTGGCACTATTTTCTACTCTC
LOC_Os07g03230
Target Sequence 
CAATGAGAGGGCATATGAGGCCAAAACTGGTGGTACCCTTGAGGGAGCACCNCCCAGGCGTAGGGGTGGTGATGGTCAGG
ACTCATCCAACTTGGGCAAGTGGCAGGAGAACTTCGTATCATCACAAGGGCGGCAAGGCGGCGGGAGGTCTGGATACTCA
GGCAGAGTTGGAGGCCCTGGAAGAGGTGGTGGTGGCTACCAGAGGGACAGGGGTAGTCAGGGTTCCCGTGGAGGCTATGG
TGGTGGTTCGCGCTTCCAAGATGGGGGAAGGTCTCGCAACCAGTCTGGTTCTATGGCAAGAGGAGGTGATGGTGGTGCAC
GCATGGTGAGCCTGAACAGGTCTGGTAGAGGTTAGAGTAGTTCTCCAGGATAGTTCTCAGCGCAAAGTTTTGCAAGTTCT
GAGNCACTGATCAAGTTTCTGGCNTTTTGGAAGTCACATCTGTTCTGAAGCTATTCTTGATCTCTTAATTTCGTTACAGC
TTACAGTTTAAATTTGTCGGACACTTGACAAAGAGCTCTCTGGTTTGTACCATGGGAGTGAGGACAGTATTCACTCCTAN
ATTTGATATAATGCTGGCACTATTTTCTACTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis