Browse Element(s) Details


Os.48101.1.S1_at

Description gb:AK101782.1
DB_XREF= gi:32986991
TID=Os.48101.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48101 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033065A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065A06, full insert sequence.
FL= gb:AK071973.1 gb:AK101782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g548107/11Beta-D-xylosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54759OsAffx.14417.1.S1_s_at11/114+32337917..32346340expressed protein
LOC_Os04g54759Os.53699.1.S1_at11/114+32337917..32346340expressed protein
LOC_Os04g54759OsAffx.14417.1.S1_at7/114+32337917..32346340expressed protein
LOC_Os04g54780NANA4+32350681..32353533hypothetical protein
LOC_Os04g54790Os.28255.1.S1_at11/114+32355340..32362610ABC1 family protein, expressed
LOC_Os04g54800Os.35335.1.A1_s_at11/114+32363062..32366659Shikimate kinase, chloroplast precursor, putative, expressed
LOC_Os04g54810Os.48101.1.S1_at7/114+32370051..32376828Beta-D-xylosidase, putative, expressed
LOC_Os04g54820Os.27125.1.A1_at11/114+32381297..32384241Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os04g54830Os.36834.1.S1_at10/114+32386034..32389565expressed protein
LOC_Os04g54840Os.48809.1.S1_at10/114+32390816..32399859DNA-directed RNA polymerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48101.1.S1_at--1088--5111Chr04:32370405..32370429 (25 bp)
GCACACGCTCAACCTGAGGGTTTAA
LOC_Os04g54810
Os.48101.1.S1_at--1053--8191Chr04:32370339..32370363 (25 bp)
GGAAGGGCCTCTGATCTGATTGATA
LOC_Os04g54810
Os.48101.1.S1_at--523--7611Chr04:32370287..32370311 (25 bp)
GGGAATTTGCATTACGAGTGGCCGT
LOC_Os04g54810
Os.48101.1.S1_at--125--4071Chr04:32370273..32370297 (25 bp)
CGAGTGGCCGTCAGAAATCAGAATT
LOC_Os04g54810
Os.48101.1.S1_at--974--7671Chr04:32370186..32370210 (25 bp)
GGGTCTTTTGCTGTGGGTGTTAACA
LOC_Os04g54810
Os.48101.1.S1_at--360--8531Chr04:32370150..32370174 (25 bp)
TGGAGGGTCGATTTGCAACTGTAAT
LOC_Os04g54810
Os.48101.1.S1_at--1127--4811Chr04:32370076..32370100 (25 bp)
GCTCATTTTCGTCCATTCAATTCAA
LOC_Os04g54810
Os.48101.1.S1_at--321--9691Chr04:32370042..32370066 (25 bp)
TCAAATCGTTGCTCTCAAGGGCTTT
NONE
Os.48101.1.S1_at--903--6271Chr04:32370017..32370041 (25 bp)
GATGTTCCTCCTTTCTAGAACAAGA
NONE
Os.48101.1.S1_at--827--6531Chr04:32369994..32370018 (25 bp)
GATTTTTGTACCTCTGTAGTGTGCT
NONE
Os.48101.1.S1_at--650--3291Chr04:32369926..32369951 (25 bp)
CAAAGTTTAAACCTGATGCCTATAA
NONE
Target Sequence 
GCACACGCTCAACCTGAGGGTTTAAATTGATTAGGAGTTGGAATTAAACGGGAGATTTGCTAGTGAGGAAGGGCCTCTGA
TCTGATTGATACACGGAGTTTGGAATTGGATTCGTCAAGGGAATTTGCATTACGAGTGGCCGTCAGAAATCAGAATTGGT
TAATGGGGGGTGTAATAAGGACGGACTCCCCCGTTGGAGAGAATTGGATCCTCGGGGGTGGGTCTTTTGCTGTGGGTGTT
AACATTTGATTTATTTGGAGGGTCGATTTGCAACTGTAATCTTTGGAAAAAGAAATTTCCGCAAGTGTAATTGATTGGAA
GGGAAATTAGCTCATTTTCGTCCATTCAATTCAATTCAAAATTTCAAATCGTTGCTCTCAAGGGCTTTGATGTTCCTCCT
TTCTAGAACAAGATTTTTGTACCTCTGTAGTGTGCTGGTGGTGTCATGGTGGAGTCGTGGGTGTATAATTTTACTCACCA
AAGTTTAAACCTGATGCCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis