Browse Element(s) Details


Os.48212.1.S1_at

Description gb:AK069193.1
DB_XREF= gi:32979217
TID=Os.48212.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004E10, full insert sequence.
FL= gb:AK069193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g422908/11methyladenine glycosylase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42250Os.12225.1.S1_at11/114+24774815..24780439Transferase family protein, expressed
LOC_Os04g42260OsAffx.14239.1.S1_at10/114+24784490..24787526Protein phosphatase 2C containing protein, expressed
LOC_Os04g42270Os.384.1.S1_at11/114+24788716..2479093160S ribosomal protein L23a, putative, expressed
LOC_Os04g42280OsAffx.14240.1.S1_at11/114+24792886..24796219magnesium transporter CorA-like family protein, putative, expressed
LOC_Os04g42290Os.48212.1.S1_at8/114+24798159..24801461methyladenine glycosylase family protein, putative, expressed
LOC_Os04g42310OsAffx.4056.1.S1_s_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42310OsAffx.4056.1.S1_at11/114+24816123..24817487K+ channel tetramerisation domain containing protein, expressed
LOC_Os04g42320Os.18716.1.S1_at11/114+24819826..24826676AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0008725molecular_functionDNA-3-methyladenine glycosylase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48212.1.S1_at--744--7651Chr04:24800978..24801002 (25 bp)
GGGTTCCGTAGCGTAGGCCCAACAG
LOC_Os04g42290
Os.48212.1.S1_at--756--8391Chr04:24800993..24801017 (25 bp)
GGCCCAACAGTTGTCTACACGTTTA
LOC_Os04g42290
Os.48212.1.S1_at--512--8911NONE
TGACCAATGACCACTTAATCTCCTG
NONE
Os.48212.1.S1_at--283--3051Chr04:24801050..24801073 (24 bp)
AATCTCCTGCTACCGGTTTGCTGAA
LOC_Os04g42290
Os.48212.1.S1_at--276--9031Chr04:24801082..24801106 (25 bp)
TGCAGCAACTGGTTCTAACACAACT
LOC_Os04g42290
Os.48212.1.S1_at--1129--1391Chr04:24801127..24801151 (25 bp)
AGACAGTAGCAATCGTGCCACGGAA
LOC_Os04g42290
Os.48212.1.S1_at--1016--8171Chr04:24801164..24801188 (25 bp)
GGAACCAATGGACTAGCTGCTGATA
LOC_Os04g42290
Os.48212.1.S1_at--874--10151NONE
TATCGTAGCGTTTAGGTGTGGCCTG
NONE
Os.48212.1.S1_at--184--8471NONE
TGGCCTGATCGTTGTTACTTGTCAC
NONE
Os.48212.1.S1_at--27--9751Chr04:24801307..24801331 (25 bp)
TACTTGTCACGTTGTAGCGTAGGAC
LOC_Os04g42290
Os.48212.1.S1_at--654--10791Chr04:24801404..24801428 (25 bp)
TTGTTTCCAAACCTGCAGTACTGAG
LOC_Os04g42290
Target Sequence 
GGGTTCCGTAGCGTAGGCCCAACAGTTGTCTACACGTTTATGCAAGTTTCAGGCATGACCAATGACCACTTAATCTCCTG
CTACCGGTTTGCTGAATGCGCTGCTGCAGCAACTGGTTCTAACACAACTGTTGGGAGCGAAACGAATTCAGACAGTAGCA
ATCGTGCCACGGAACAGCAGATGAATGGAACCAATGGACTAGCTGCTGATATTGCACGTACAATAGATGAACTTAGCATT
TCATAGCGAATAGGGGGAAATGCTCAAATGATGTATAAGCATGTGTGTATTTTGTTTATCGTAGCGTTTAGGTGTGGCCT
GATCGTTGTTACTTGTCACGTTGTAGCGTAGGACATTTTAGACTTTAGCATTTCAAGACAAATGAAACGGCGGCATGTAA
TGATGTATATTCTTTCTTTGTGATGCTTGTTTCCAAACCTGCAGTACTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis