Browse Element(s) Details


Os.48315.1.S1_at

Description gb:AK066209.1
DB_XREF= gi:32976227
TID=Os.48315.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058D09, full insert sequence.
FL= gb:AK066209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6180011/11glycoside hydrolase family 28 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein
LOC_Os03g61780Os.49920.2.S1_at10/113+34964871..34967693expressed protein
LOC_Os03g61780Os.53362.2.S1_at1/113+34964871..34967693expressed protein
LOC_Os03g61790Os.17255.1.S1_at11/113+34967935..34970720RNA 3'-terminal phosphate cyclase family protein, expressed
LOC_Os03g61800Os.48315.1.S1_at11/113+34976288..34980561glycoside hydrolase family 28 protein, putative, expressed
LOC_Os03g61810Os.53628.2.S1_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61810Os.53628.1.S1_x_at11/113+34980933..34983588Guanine deaminase, putative, expressed
LOC_Os03g61820Os.52839.1.S1_x_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61820Os.7214.1.S1_at11/113+34985543..34991069Flap endonuclease-1b, putative, expressed
LOC_Os03g61840Os.16408.1.S1_at1/113+34995699..34997516hypothetical protein
LOC_Os03g61850NANA3+35004591..35007446transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48315.1.S1_at--1013--1511Chr03:34979991..34980015 (25 bp)
AGCAGCATTTGCCTGTCCAATGTTT
LOC_Os03g61800
Os.48315.1.S1_at--438--9211Chr03:34980006..34980030 (25 bp)
TCCAATGTTTCCCTCAGTGTACAGT
LOC_Os03g61800
Os.48315.1.S1_at--148--7451Chr03:34980022..34980046 (25 bp)
GTGTACAGTCTATGCATCCCTGGAA
LOC_Os03g61800
Os.48315.1.S1_at--176--4991Chr03:34980035..34980059 (25 bp)
GCATCCCTGGAATTGTTCGCTTATC
LOC_Os03g61800
Os.48315.1.S1_at--722--7871Chr03:34980063..34980087 (25 bp)
GGTTATTCAAACTCTGTGATCCCAG
LOC_Os03g61800
Os.48315.1.S1_at--53--7411Chr03:34980078..34980102 (25 bp)
GTGATCCCAGAGTCATGTGAGCAAC
LOC_Os03g61800
Os.48315.1.S1_at--133--291Chr03:34980181..34980205 (25 bp)
ATAGATTGTCGAGTGCCAGCAGATT
LOC_Os03g61800
Os.48315.1.S1_at--817--4911Chr03:34980285..34980309 (25 bp)
GCTTCGTGGGATGCGTCATGTACAT
LOC_Os03g61800
Os.48315.1.S1_at--1087--6971Chr03:34980387..34980411 (25 bp)
GTACCATGCATGTTTTTGTCACCAT
LOC_Os03g61800
Os.48315.1.S1_at--11--6291Chr03:34980423..34980447 (25 bp)
GATGTATCTGTTCCATAGCCTTTTG
LOC_Os03g61800
Os.48315.1.S1_at--415--2411Chr03:34980456..34980480 (25 bp)
AAAACAGTATGATCCTCCTTCCAAT
LOC_Os03g61800
Target Sequence 
AGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTC
AAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGNAGTT
CTTCAGCNATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCG
ATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATC
TGATTCTTGCGATTGTTTTTTTTTTATTAGCANGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAATGTTGGTGTAC
CATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCC
TCCTTCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis