Browse Element(s) Details

Os.48500.1.A1_s_at

Description

gb:CR283796
DB_XREF= gi:44670362
DB_XREF=CR283796
CLONE=p780g10p3
TID=Os.48500.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48500 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g07270	11/11	expressed protein
LOC_Os01g57250	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g07190	Os.28404.1.A1_at	11/11	3	+	3660211..3662388	expressed protein
LOC_Os03g07200	Os.20934.1.A1_at	1/11	3	+	3662283..3664420	expressed protein
LOC_Os03g07220	OsAffx.25003.1.S1_at	11/11	3	+	3669116..3673548	pentatricopeptide, putative
LOC_Os03g07234	Os.13504.1.S1_s_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	OsAffx.25004.1.S1_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	OsAffx.12761.1.S1_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07234	Os.13561.1.S1_s_at	11/11	3	+	3673853..3680697	pentatricopeptide, putative
LOC_Os03g07250	Os.5752.1.S1_s_at	11/11	3	+	3681052..3683171	Cytochrome P450 family protein, expressed
LOC_Os03g07250	OsAffx.12762.1.S1_x_at	11/11	3	+	3681052..3683171	Cytochrome P450 family protein, expressed
LOC_Os03g07260	OsAffx.12763.1.S1_at	11/11	3	+	3684278..3685888	TPR Domain containing protein
LOC_Os03g07270	Os.48500.1.A1_s_at	11/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07270	Os.38457.1.S1_s_at	11/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07270	OsAffx.3864.1.S1_x_at	1/11	3	+	3686298..3687608	expressed protein
LOC_Os03g07290	Os.14697.1.S1_at	11/11	3	+	3690248..3692364	ribosomal protein L32 containing protein, expressed
LOC_Os03g07310	Os.52078.1.S1_at	11/11	3	+	3692603..3700216	Axi 1 protein, putative, expressed
LOC_Os03g07310	Os.52078.2.S1_at	11/11	3	+	3692603..3700216	Axi 1 protein, putative, expressed
LOC_Os03g07300	Os.12622.1.S1_at	10/11	3	+	3693033..3696507	Ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed
LOC_Os03g07320	NA	NA	3	+	3702087..3702740	transposon protein, putative, Pong sub-class
LOC_Os03g07330	OsAffx.3162.1.S1_at	11/11	3	+	3703740..3705272	pentatricopeptide, putative
LOC_Os03g07340	Os.12963.1.S1_at	11/11	3	+	3706875..3708033	50S ribosomal protein L18, chloroplast precursor, putative, expressed
LOC_Os03g07350	OsAffx.12764.2.S1_at	11/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350	OsAffx.12764.2.S1_x_at	11/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed
LOC_Os03g07350	OsAffx.12764.1.S1_at	1/11	3	+	3708333..3712595	glycosyl transferase family 2 protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.48500.1.A1_s_at--1126--1047	3	Chr11:26097879..26097903 (25 bp)	TTAAGGATGGCTCTTTTGCTTGGAT	NONE
Os.48500.1.A1_s_at--1002--977	3	Chr11:26097880..26097904 (25 bp)	TAAGGATGGCTCTTTTGCTTGGATA	NONE
Os.48500.1.A1_s_at--846--291	3	Chr11:26097881..26097905 (25 bp)	AAGGATGGCTCTTTTGCTTGGATAT	NONE
Os.48500.1.A1_s_at--583--99	4	Chr11:26097882..26097906 (25 bp)	AGGATGGCTCTTTTGCTTGGATATG	NONE
Os.48500.1.A1_s_at--1108--799	4	Chr11:26097883..26097907 (25 bp)	GGATGGCTCTTTTGCTTGGATATGT	NONE
Os.48500.1.A1_s_at--816--623	4	Chr11:26097884..26097908 (25 bp)	GATGGCTCTTTTGCTTGGATATGTA	NONE
Os.48500.1.A1_s_at--1126--85	4	Chr11:26097885..26097909 (25 bp)	ATGGCTCTTTTGCTTGGATATGTAA	NONE
Os.48500.1.A1_s_at--589--849	4	Chr11:26097886..26097910 (25 bp)	TGGCTCTTTTGCTTGGATATGTAAT	NONE
Os.48500.1.A1_s_at--46--833	4	Chr11:26097887..26097911 (25 bp)	GGCTCTTTTGCTTGGATATGTAATG	NONE
Os.48500.1.A1_s_at--1013--481	4	Chr11:26097888..26097912 (25 bp)	GCTCTTTTGCTTGGATATGTAATGG	NONE
Os.48500.1.A1_s_at--1083--871	3	Chr11:26097905..26097929 (25 bp)	TGTAATGGGGTTTATTCCCTAGATC	NONE

Target Sequence

TTAAGGATGGCTCTTTTGCTTGGATATGTAATGGGGTTTATTCCCTAGATC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis