Browse Element(s) Details


Os.48853.1.S1_at

Description gb:AK121496.1
DB_XREF= gi:37991119
TID=Os.48853.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033001G17, full insert sequence.
FL= gb:AK121496.1 gb:AK060651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g245409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24510OsAffx.13241.1.S1_at1/116+14364345..14368020retrotransposon, putative, centromere-specific
LOC_Os06g24520OsAffx.15598.1.S1_at11/116+14370761..14371030hypothetical protein
LOC_Os06g24530OsAffx.31753.1.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24530OsAffx.31753.4.S1_s_at11/116+14378943..14382469hAT family dimerisation domain containing protein
LOC_Os06g24540Os.48853.1.S1_at9/116+14385822..14389245expressed protein
LOC_Os06g24550OsAffx.27807.1.S1_at11/116+14393106..14393456hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_at11/116+14397933..14398253hypothetical protein
LOC_Os06g24560OsAffx.15600.1.S1_x_at10/116+14397933..14398253hypothetical protein
LOC_Os06g24570OsAffx.448.1.S1_x_at1/116+14401930..14407552retrotransposon protein, putative, unclassified
LOC_Os06g24580OsAffx.28472.1.S1_x_at6/116+14413518..14414629hypothetical protein
LOC_Os06g24580OsAffx.13714.1.S1_x_at1/116+14413518..14414629hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48853.1.S1_at--1147--5991Chr06:14386363..14386387 (25 bp)
GAGAGTTTTCAAGCTTTGTCGTGTA
LOC_Os06g24540
Os.48853.1.S1_at--927--7671Chr06:14386227..14386251 (25 bp)
GGGTTGCTTCATGTGTGTGCTAAAT
LOC_Os06g24540
Os.48853.1.S1_at--985--7391Chr06:14386213..14386237 (25 bp)
GTGTGCTAAATTCCTTTTTTCGTTG
LOC_Os06g24540
Os.48853.1.S1_at--1042--6431Chr06:14386186..14386210 (25 bp)
GATCATGATGTTGTGCAGTGCAGCT
LOC_Os06g24540
Os.48853.1.S1_at--965--7331Chr06:14386169..14386193 (25 bp)
GTGCAGCTATAGTTCTTTCTTTCCC
LOC_Os06g24540
Os.48853.1.S1_at--483--9711Chr06:14386140..14386164 (25 bp)
TCAACATCTGCTTGTTTTTGCCACA
LOC_Os06g24540
Os.48853.1.S1_at--514--10391Chr06:14386125..14386149 (25 bp)
TTTTGCCACATGTTAGGTCTTCCTT
LOC_Os06g24540
Os.48853.1.S1_at--36--10451Chr06:14386113..14386137 (25 bp)
TTAGGTCTTCCTTCAACATTCAGCT
LOC_Os06g24540
Os.48853.1.S1_at--692--9711Chr06:14386101..14386125 (25 bp)
TCAACATTCAGCTTCATCATTCCTT
LOC_Os06g24540
Os.48853.1.S1_at--859--351NONE
ATAAGTTATTGATCCACACTGGCAA
NONE
Os.48853.1.S1_at--1039--571NONE
ATGCCATCCAGTCAAACCTTTAGTA
NONE
Target Sequence 
GAGAGTTTTCAAGCTTTGTCGTGTAATAGTGATGAAGTTCTTTCATGCTTGGTGCTGTTATGTGATGTGGACAAACAAAT
AATAGCATGTTAAGTTACATCAGATAGATTAGGGAGGAGTATATGTAAATCTCTTGGGGTTGCTTCATGTGTGTGCTAAA
TTCCTTTTTTCGTTGATGATCATGATGTTGTGCAGTGCAGCTATAGTTCTTTCTTTCCCCCCATCAACATCTGCTTGTTT
TTGCCACATGTTAGGTCTTCCTTCAACATTCAGCTTCATCATTCCTTCATTTCCTTGCAAATAAGTTATTGATCCACACT
GGCAAGNTGGTAGGNTCACATGGCTTGATTTATAAAAAATGCCATCCAGTCAAACCTTTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis