Browse Element(s) Details


Os.48875.1.S1_at

Description gb:AK063913.1
DB_XREF= gi:32973931
TID=Os.48875.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A09, full insert sequence.
FL= gb:AK063913.1 gb:AK099290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5049010/11Glutamine synthetase root isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50450Os.49263.1.S1_at11/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.3066.1.S1_at2/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50450Os.41315.1.S1_x_at1/113+28745042..28748293atypical receptor-like kinase MARK, putative, expressed
LOC_Os03g50470Os.54369.1.S1_at10/113+28754018..28759470expressed protein
LOC_Os03g50470Os.37705.2.S1_x_at3/113+28754018..28759470expressed protein
LOC_Os03g50480Os.5894.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50480Os.50437.1.S1_at11/113+28762755..28769269Phosphoglucomutase, cytoplasmic 2, putative, expressed
LOC_Os03g50490Os.48875.1.S1_at10/113+28771610..28775543Glutamine synthetase root isozyme 2, putative, expressed
LOC_Os03g50500OsAffx.3564.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50500Os.3075.1.S1_s_at11/113+28780000..28786002expressed protein
LOC_Os03g50510OsAffx.13440.1.S1_at10/113+28788451..28793744Threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed
LOC_Os03g50520OsAffx.13442.2.S1_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.38545.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed
LOC_Os03g50520Os.9442.1.S1_s_at11/113+28796019..28801712Dynamin-related protein 1C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006542biological_processglutamine biosynthesis
GO:0005829cellular_componentcytosol
GO:0004356molecular_functionglutamate-ammonia ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48875.1.S1_at--558--5391Chr03:28772796..28772820 (25 bp)
GAAGCTTGGCATGCGCCACCGTGAG
LOC_Os03g50490
Os.48875.1.S1_at--756--4511Chr03:28772714..28772738 (25 bp)
GCCGACATCAACAACTTCGTCTGGG
LOC_Os03g50490
Os.48875.1.S1_at--452--5731Chr03:28771973..28772097 (25 bp)
GACGGCAAAGGTTACTTCGAGGACA
LOC_Os03g50490
Os.48875.1.S1_at--1126--2491Chr03:28771934..28771958 (25 bp)
AACATGGACCCGTACCTGGTGACCG
LOC_Os03g50490
Os.48875.1.S1_at--856--7671Chr03:28771817..28771841 (25 bp)
GGGTTGATGAACTGCTTTCTCGCGT
LOC_Os03g50490
Os.48875.1.S1_at--1050--10571Chr03:28771801..28771825 (25 bp)
TTCTCGCGTTCTGGGTTTCATGGAA
LOC_Os03g50490
Os.48875.1.S1_at--1027--3851Chr03:28771757..28771781 (25 bp)
CTGACGCTGGTGCTGTTAGAAACTT
LOC_Os03g50490
Os.48875.1.S1_at--329--1991Chr03:28771715..28771739 (25 bp)
ACTGCGATGTGCTCTCAAATTTCTC
LOC_Os03g50490
Os.48875.1.S1_at--745--2251Chr03:28771699..28771723 (25 bp)
AAATTTCTCATGAGGCCATCACCTG
LOC_Os03g50490
Os.48875.1.S1_at--1055--9671Chr03:28771681..28771705 (25 bp)
TCACCTGCAGCATCTCATGAAATAG
LOC_Os03g50490
Os.48875.1.S1_at--700--9971Chr03:28771602..28771626 (25 bp)
TACCATCTACTCTCCTCAATAATGA
NONE
Target Sequence 
GAAGCTTGGCATGCGCCACCGTGAGCACATCGCCGCCTACGGCGACGGCAACGAGCGCCGCCTCACCGGCCGCCACGAGA
CCGCCGACATCAACAACTTCGTCTGGGGCGTAGCGAACCGCGGCGCGTCGGTGCGTGTCGGCCGGGACACCGAGAAGGAC
GGCAAAGGTTACTTCGAGGACAGGAGGCCGGCGTCCAACATGGACCCGTACCTGGTGACCGNCATGATCGCCGAGACCAC
CATCCTCTGGGAGCCCANGCCACGGNCACGGCCACGGCCAATCCAACGGCAAGTGAGGAGGAGTCGCCTCGCCCGGGTTG
ATGAACTGCTTTCTCGCGTTCTGGGTTTCATGGAAATCTGTGTGTGTGTGNTCTCTGACGCTGGTGCTGTTAGAAACTTC
CAATAATTCAGAAATAACTGCGATGTGCTCTCAAATTTCTCATGAGGCCATCACCTGCAGCATCTCATGAAATAGATCTA
TTGCAATGACAATACCAATGGCAACGCAAAATTTTATGGTACCTCCAGATACCATCTACTCTCCTCAATAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis