Browse Element(s) Details


Os.48883.1.S1_at

Description gb:CA765296
DB_XREF= gi:27547167
DB_XREF=AF53-Rpf_06_P10_T7_047.ab1
CLONE=C0002290
TID=Os.48883.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48883 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48006 (A.thaliana) T48006 hypothetical protein T17J13.100 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed
LOC_Os01g21830OsAffx.11151.1.S1_at11/111+12231086..12231889hypothetical protein
LOC_Os01g21840Os.35344.18.S1_x_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_at7/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840Os.35344.3.S1_x_at6/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21840OsAffx.22940.5.S1_x_at3/111+12233468..12240200transposon protein, putative, Mutator sub-class
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA
LOC_Os01g21900NANA1+12274415..12274876Soluble inorganic pyrophosphatase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48883.1.S1_at--1148--9011Chr01:12250538..12250562 (25 bp)
TGCAAACATATGTGCTTTTAGGTAT
LOC_Os01g21860
Os.48883.1.S1_at--288--10751Chr01:12250564..12250588 (25 bp)
TTGAATGTATCTATAGCCCATGCTT
LOC_Os01g21860
Os.48883.1.S1_at--639--2991Chr01:12250567..12250591 (25 bp)
AATGTATCTATAGCCCATGCTTTTG
LOC_Os01g21860
Os.48883.1.S1_at--515--10391Chr01:12250587..12250611 (25 bp)
TTTTGCAACATCTTAAATCCTCCTT
LOC_Os01g21860
Os.48883.1.S1_at--197--10751Chr01:12250589..12250613 (25 bp)
TTGCAACATCTTAAATCCTCCTTTT
LOC_Os01g21860
Os.48883.1.S1_at--1022--431Chr01:12250596..12250620 (25 bp)
ATCTTAAATCCTCCTTTTATGCCAC
LOC_Os01g21860
Os.48883.1.S1_at--277--10491Chr01:12250599..12250623 (25 bp)
TTAAATCCTCCTTTTATGCCACCTT
LOC_Os01g21860
Os.48883.1.S1_at--18--3031Chr01:12250602..12250626 (25 bp)
AATCCTCCTTTTATGCCACCTTTGT
LOC_Os01g21860
Os.48883.1.S1_at--340--9251Chr01:12250607..12250631 (25 bp)
TCCTTTTATGCCACCTTTGTGCAGT
LOC_Os01g21860
Os.48883.1.S1_at--66--10371Chr01:12250610..12250634 (25 bp)
TTTTATGCCACCTTTGTGCAGTCAA
LOC_Os01g21860
Os.48883.1.S1_at--218--10131Chr01:12250613..12250637 (25 bp)
TATGCCACCTTTGTGCAGTCAAGGA
LOC_Os01g21860
Target Sequence 
TGCAAACATATGTGCTTTTAGGTATNTTGAATGTATCTATAGCCCATGCTTTTGCAACATCTTAAATCCTCCTTTTATGC
CACCTTTGTGCAGTCAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis