Browse Element(s) Details


Os.49129.1.S1_at

Description gb:AK120232.1
DB_XREF= gi:37989855
TID=Os.49129.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043H21, full insert sequence.
FL= gb:AK120232.1 gb:AK062016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3363011/11Ferredoxin-3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33590Os.13584.1.S1_at11/114+20151565..20157670hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33600NANA4+20161138..20165762hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os04g33610Os.49564.1.S1_at11/114+20171268..20172240expressed protein
LOC_Os04g33620OsAffx.30606.2.S1_x_at11/114+20176783..20177366hypothetical protein
LOC_Os04g33630Os.49129.1.S1_at11/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33630Os.52100.1.S1_at1/114+20178236..20181835Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os04g33640Os.24051.1.S1_x_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_s_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.1.S1_at11/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.24051.2.S1_at10/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33640Os.47778.1.A1_at1/114+20185524..20190557Glycosyl hydrolases family 17 protein, expressed
LOC_Os04g33650OsAffx.26310.1.S1_at9/114+20193522..20196598expressed protein
LOC_Os04g33660Os.24816.1.A1_at11/114+20200327..20202617Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os04g33670Os.55574.1.S1_at11/114+20204614..20205695expressed protein
LOC_Os04g33680Os.47985.1.S1_at11/114+20206158..20207892Glutaredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49129.1.S1_at--191--7131Chr04:20181619..20181643 (25 bp)
GTCATCCAGACGCACAAGGAGGCAG
LOC_Os04g33630
Os.49129.1.S1_at--914--6191Chr04:20181637..20181661 (25 bp)
GAGGCAGACCTGTATTAGTTAGCTA
LOC_Os04g33630
Os.49129.1.S1_at--819--1211Chr04:20181653..20181677 (25 bp)
AGTTAGCTAGCTGCGTTGCACTTGA
LOC_Os04g33630
Os.49129.1.S1_at--86--6531Chr04:20181679..20181703 (25 bp)
GATTTGATCCATCACTTTCGATGCA
LOC_Os04g33630
Os.49129.1.S1_at--747--4051Chr04:20181697..20181721 (25 bp)
CGATGCAATCTTGACACTGTGGTTT
LOC_Os04g33630
Os.49129.1.S1_at--37--1971Chr04:20181712..20181736 (25 bp)
ACTGTGGTTTGCACATGCACTTGCC
LOC_Os04g33630
Os.49129.1.S1_at--492--5111Chr04:20181728..20181752 (25 bp)
GCACTTGCCGTTGAAACTAGCCAGA
LOC_Os04g33630
Os.49129.1.S1_at--263--3131Chr04:20181752..20181776 (25 bp)
AATTTATCGTCATCTTCCACTTGGA
LOC_Os04g33630
Os.49129.1.S1_at--646--9771Chr04:20181783..20181807 (25 bp)
TAAGTGTACGTTCTTGTCTCTGCAT
LOC_Os04g33630
Os.49129.1.S1_at--1099--6731Chr04:20181792..20181816 (25 bp)
GTTCTTGTCTCTGCATTGTTCTCAA
LOC_Os04g33630
Os.49129.1.S1_at--210--6731Chr04:20181809..20181833 (25 bp)
GTTCTCAATGGATATCTCGGAATCT
LOC_Os04g33630
Target Sequence 
GTCATCCAGACGCACAAGGAGGCAGACCTGTATTAGTTAGCTAGCTGCGTTGCACTTGATGATTTGATCCATCACTTTCG
ATGCAATCTTGACACTGTGGTTTGCACATGCACTTGCCGTTGAAACTAGCCAGAATTTATCGTCATCTTCCACTTGGATT
GAGTTAAGTGTACGTTCTTGTCTCTGCATTGTTCTCAATGGATATCTCGGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis