Browse Element(s) Details


Os.49135.1.S1_at

Description gb:AK101291.1
DB_XREF= gi:32986500
TID=Os.49135.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G16, full insert sequence.
FL= gb:AK101291.1 gb:AK119633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7252011/11phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72490Os.9355.1.S1_at11/111+42364026..42366470lateral root primordium 1, putative, expressed
LOC_Os01g72500OsAffx.25007.2.S1_s_at8/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.2.S1_at7/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72500OsAffx.25007.1.S1_at6/111+42367975..42369762retrotransposon protein, putative, unclassified
LOC_Os01g72510Os.6791.1.S1_x_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.6791.1.S1_at11/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72510Os.46987.1.S1_x_at1/111+42385787..42387433Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g72520Os.57312.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72520Os.49135.1.S1_at11/111+42390110..42394633phosphoesterase family protein, putative, expressed
LOC_Os01g72530Os.18922.2.S1_at11/111+42400970..42401831EF hand family protein, expressed
LOC_Os01g72540OsAffx.2462.1.S1_at11/111+42405531..42405986EF hand family protein
LOC_Os01g72550OsAffx.11828.1.S1_at11/111+42406965..42407405EF hand family protein
LOC_Os01g72560OsAffx.2463.1.S1_at11/111+42407915..42411891expressed protein
LOC_Os01g72570Os.10378.2.A1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.3.S1_s_at11/111+42413401..42422736expressed protein
LOC_Os01g72570Os.10378.1.A1_at8/111+42413401..42422736expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0005886cellular_componentplasma membrane
GO:0004629molecular_functionphospholipase C activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49135.1.S1_at--320--1891Chr01:42390780..42390804 (25 bp)
ACGTTTGAGAGTGTCGTGCAAGGCA
LOC_Os01g72520
Os.49135.1.S1_at--634--5951Chr01:42390622..42390646 (25 bp)
GAGCAACTCCCAATGCCGATGAGGA
LOC_Os01g72520
Os.49135.1.S1_at--723--9031Chr01:42390495..42390519 (25 bp)
TGCAGGACACGATCAGGGACAGGAT
LOC_Os01g72520
Os.49135.1.S1_at--102--2591Chr01:42390469..42390493 (25 bp)
AACGTCAGGGAAGGCATCGCGTACA
LOC_Os01g72520
Os.49135.1.S1_at--942--7551Chr01:42390440..42390464 (25 bp)
GGGCGCTGTAAAGCGCTTCTTCGAG
LOC_Os01g72520
Os.49135.1.S1_at--833--5931Chr01:42390379..42390403 (25 bp)
GAGCAGATCGTCAAGATGAGGCCAT
LOC_Os01g72520
Os.49135.1.S1_at--448--551Chr01:42390338..42390362 (25 bp)
ATCCCCTGCGATCGAGCAACCATAG
LOC_Os01g72520
Os.49135.1.S1_at--253--5191Chr01:42390212..42390236 (25 bp)
GCAAGGAGTGCTTTGTTCTAGAATT
LOC_Os01g72520
Os.49135.1.S1_at--741--7971Chr01:42390171..42390195 (25 bp)
GGATCGATCTATATACATGGCCGGG
LOC_Os01g72520
Os.49135.1.S1_at--594--871Chr01:42390155..42390179 (25 bp)
ATGGCCGGGCTGTACTGTACAAATT
LOC_Os01g72520
Os.49135.1.S1_at--1023--8291Chr01:42390112..42390136 (25 bp)
GGCTTAGTATACAGATCGATCGATT
LOC_Os01g72520
Target Sequence 
ACGTTTGAGAGTGTCGTGCAAGGCAGAACTGAGCCAAGGACGGATTGCCCAGAGCAACTCCCAATGCCGATGAGGATACG
GCTGACGGAGGCGAACGAGGAGGCGAAGCTGAGTGAGTTCCAGCAGGAGCTGGTTCAGCTGGCGTCGGTGCTCAACGGGG
ACCACCAGCTGAGCAGCCTGCAGGACACGATCAGGGACAGGATGAACGTCAGGGAAGGCATCGCGTACATGCGGGGCGCT
GTAAAGCGCTTCTTCGAGNCCGGCATGTCAGCCAAGAGGATGGGCGTCGACGACGAGCAGATCGTCAAGATGAGGCCATC
GCTCACCACCAGGACATCCCCTGCGATCGAGCAACCATAGAAATAGAAACAAGAGCAATAGAAGCAAATAAGGATACAGG
TTTATTNTATATGCNNAAAAANAAAAAAAATCATGGTGCTTGCATATATGTAGCAGAGCCAGCAAGGAGTGCTTTGTTCT
AGAATTAGTTGAGATCTCTCATGGATCGATCTATATACATGGCCGGGCTGTACTGTACAAATTGATGAAACGTTAATTAT
TGGCTTAGTATACAGATCGATCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis