Browse Element(s) Details


Os.49144.1.S1_s_at

Description gb:AK111635.1
DB_XREF= gi:37988298
TID=Os.49144.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119H22, full insert sequence.
FL= gb:AK111635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2799011/11leucine-rich repeat transmembrane protein kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49144.1.S1_s_at--856--511Chr03:16052206..16052230 (25 bp)
ATCGATGCGTTAGATCAGATGGTAG
LOC_Os03g27990
Os.49144.1.S1_s_at--521--5791Chr03:16052132..16052155 (24 bp)
GACGCAATCGCGCTCTGTGTCCAGC
LOC_Os03g27990
Os.49144.1.S1_s_at--488--1991Chr03:16051889..16051913 (25 bp)
ACTCCGGTGACTACACATTCTAGGG
LOC_Os03g27990
Os.49144.1.S1_s_at--530--10051Chr03:16051827..16051851 (25 bp)
TAGTTTTTTGTGACAGCTACAGAAG
LOC_Os03g27990
Os.49144.1.S1_s_at--207--2831Chr03:16051805..16051829 (25 bp)
AAGTTACAGATGTTGCAGTTTGCTC
LOC_Os03g27990
Os.49144.1.S1_s_at--313--6671Chr03:16051794..16051818 (25 bp)
GTTGCAGTTTGCTCAGCTACACAGT
LOC_Os03g27990
Os.49144.1.S1_s_at--716--6851Chr03:16051788..16051812 (25 bp)
GTTTGCTCAGCTACACAGTGATTTG
LOC_Os03g27990
Os.49144.1.S1_s_at--134--10231Chr03:16051767..16051791 (25 bp)
TTTGTAGTACTGATAAGCCGTTGTC
LOC_Os03g27990
Os.49144.1.S1_s_at--163--2671Chr03:16051753..16051777 (25 bp)
AAGCCGTTGTCATGTAACCTGTAAA
LOC_Os03g27990
Os.49144.1.S1_s_at--714--2431Chr03:16051731..16051755 (25 bp)
AAAAGTATGCCTTTGGACTGCCAAA
LOC_Os03g27990
Os.49144.1.S1_s_at--789--10131Chr03:16051726..16051750 (25 bp)
TATGCCTTTGGACTGCCAAACTCTG
LOC_Os03g27990
Target Sequence 
ATCGATGCGTTAGATCAGATGGTAGATNCAGCACTGGAAGGACTGTACCNTGCAAAATCCCTCTCTCGATTCGCCGACGC
AATCGCGCTCTGTGTCCAGCCTGANCCGGAATTCAGGCCACCGATGTCGGAGNTCGTNCAGTCNTTANTCCNGGCTCGTG
CAGAGGTCAAGCATGGGGTCAGTCCTCAGTGGNGGCGAGAGCATTTCGCGACGANACGACNACTCCGGTGACTACACATT
CTAGGGTGAAAAAGAAAAAAANNAATGCTTGCATGTTTNTGTCAGTAGTTTTTTGTGACAGCTACAGAAGTTACAGATGT
TGCAGTTTGCTCAGCTACACAGTGATTTGTAGTACTGATAAGCCGTTGTCATGTAACCTGTAAAAGTATGCCTTTGGACT
GCCAAACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49144.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis