Browse Element(s) Details


Os.49179.1.S1_at

Description gb:AK103795.1
DB_XREF= gi:32989004
TID=Os.49179.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145P04, full insert sequence.
FL= gb:AK101965.1 gb:AK103795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5779011/11Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g096503/11Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57740NANA4+34174089..34174865expressed protein
LOC_Os04g57750Os.5821.1.S1_at10/114+34178051..34179112Plastocyanin-like domain containing protein, expressed
LOC_Os04g57760Os.27395.1.S1_a_at11/114+34181023..34182505expressed protein
LOC_Os04g57760OsAffx.14458.1.S1_x_at11/114+34181023..34182505expressed protein
LOC_Os04g57770Os.12921.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57770OsAffx.4202.1.S1_at11/114+34187874..34189427expressed protein
LOC_Os04g57780OsAffx.26647.1.S1_at10/114+34191367..34194102TPR Domain containing protein, expressed
LOC_Os04g57790Os.49179.1.S1_at11/114+34194379..34196563Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os04g57800Os.47989.1.S1_at10/114+34196864..34201247NPH3 family protein, expressed
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49179.1.S1_at--1137--8412Chr05:5431037..5431061 (25 bp)
GGCCTTCCTACGAACCTGATTGGAG
LOC_Os05g09650
Os.49179.1.S1_at--638--1752Chr05:5431050..5431074 (25 bp)
ACCTGATTGGAGAGACTGCCCTTAA
LOC_Os05g09650
Os.49179.1.S1_at--990--5491Chr04:34196037..34196061 (25 bp)
GAACAGATGTTCCTTCCAATGTGCA
LOC_Os04g57790
Os.49179.1.S1_at--1104--2972Chr05:5431106..5431129 (24 bp)
AATGTGCATGCTTTCAGTCGTTGGG
LOC_Os05g09650
Os.49179.1.S1_at--224--2312Chr04:34196104..34196128 (25 bp)
AAAGGACACTGTTTTTTCAGCATTA
LOC_Os04g57790
Os.49179.1.S1_at--420--10511Chr04:34196119..34196143 (25 bp)
TTCAGCATTATTTCCCATGGGCTTC
LOC_Os04g57790
Os.49179.1.S1_at--286--1531Chr04:34196147..34196171 (25 bp)
AGCAGGTCTTAAGTGCACAGATCTT
LOC_Os04g57790
Os.49179.1.S1_at--1013--1392Chr05:5431323..5431347 (25 bp)
AGACTTTTAGATCGGTACATTTTGC
NONE
Os.49179.1.S1_at--256--4931Chr04:34196432..34196456 (25 bp)
GCTTGCAATGTTGATGTTCCCTTTA
LOC_Os04g57790
Os.49179.1.S1_at--21--7071Chr04:34196492..34196516 (25 bp)
GTAATACTAGCTGAATGCCGGTACT
LOC_Os04g57790
Os.49179.1.S1_at--986--591Chr04:34196506..34196530 (25 bp)
ATGCCGGTACTTCGCTATGGACAGA
LOC_Os04g57790
Target Sequence 
GGCCTTCCTACGAACCTGATTGGAGAGACTGCCCTTAAGGTCATTGAGTTTGAACAGATGTTCCTTCCAATGTGCATGCT
TTCAGTCGTTGGGGGCTCTGCGAGGTTCAATGAGAAACAAAGGACACTGTTTTTTCAGCATTATTTCCCATGGGCTTCAA
AAGCAGGTCTTAAGTGCACAGATCTTATGTCTGTGTACTATGAGAAGCATTTTCATGAAGATTTGGANGAAGTGAGGAGG
AACTGGGGAATTATANCNTGCCCTNATCCCAAAAGGAGCAGTGTNTAGACTTTTAGATCGGTACATTTTGCATGAAAGAT
GTNTGAACTTGGTNTTNANCTTTGTCTANGTTAGTATTAGCTCTTNCCTTTNAAGAATAATAGNAAGAGTTATGCTANTG
ATACCTAAAAAAANCTAGTNATTCTCTNTAANTTAGCATAGCAACTAAGCTTGCAATGTTGATGTTCCCTTTAACAATAG
TGTAGATGAGTTAATTACATTTTTATGTGTAATACTAGCTGAATGCCGGTACTTCGCTATGGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis