Browse Element(s) Details


Os.49206.1.S1_at

Description gb:AK105283.1
DB_XREF= gi:32990492
TID=Os.49206.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E01, full insert sequence.
FL= gb:AK105283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1212011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12064Os.14776.1.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.2.A1_at11/113+6306422..6313851expressed protein
LOC_Os03g12064OsAffx.25065.1.S1_at10/113+6306422..6313851expressed protein
LOC_Os03g12064Os.14776.1.A2_at1/113+6306422..6313851expressed protein
LOC_Os03g12080NANA3+6318131..6319924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12090OsAffx.3204.1.S1_at10/113+6321465..6331026expressed protein
LOC_Os03g12100Os.54774.1.S1_x_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12100Os.54774.1.S1_at2/113+6331483..6332134retrotransposon, putative, centromere-specific, expressed
LOC_Os03g12110Os.37866.1.S1_at11/113+6333974..6336920Homocysteine S-methyltransferase 1, putative, expressed
LOC_Os03g12120Os.49206.1.S1_at11/113+6337210..6344710No apical meristem protein, expressed
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49206.1.S1_at--468--9951Chr03:6337683..6337707 (25 bp)
TACCGTGACCGGGTAGTTCATGACA
LOC_Os03g12120
Os.49206.1.S1_at--578--2351Chr03:6337615..6337639 (25 bp)
AAAGCTCCTGATGAATGGGTATTCC
LOC_Os03g12120
Os.49206.1.S1_at--281--7591Chr03:6337587..6337611 (25 bp)
GGGCATTTGGTCCTATCTCACTTTC
LOC_Os03g12120
Os.49206.1.S1_at--194--7271Chr03:6337578..6337602 (25 bp)
GTCCTATCTCACTTTCCAACTAAAG
LOC_Os03g12120
Os.49206.1.S1_at--303--991Chr03:6337520..6337544 (25 bp)
AGGAGGATCCTCTCTGAGTTATCCC
LOC_Os03g12120
Os.49206.1.S1_at--641--6071Chr03:6337505..6337529 (25 bp)
GAGTTATCCCCTGTCTTGTATATGC
LOC_Os03g12120
Os.49206.1.S1_at--658--4271Chr03:6337496..6337520 (25 bp)
CCTGTCTTGTATATGCGCTTGGTAA
LOC_Os03g12120
Os.49206.1.S1_at--442--611Chr03:6337484..6337508 (25 bp)
ATGCGCTTGGTAATCCTGCAAAGTT
LOC_Os03g12120
Os.49206.1.S1_at--268--4191Chr03:6337425..6337449 (25 bp)
CCCTTCTTCATGTGGGCTTGTAGAG
LOC_Os03g12120
Os.49206.1.S1_at--463--7711Chr03:6337350..6337374 (25 bp)
GGGTGCCATGTGTAGCCTATCTGCA
LOC_Os03g12120
Os.49206.1.S1_at--712--4451Chr03:6337336..6337360 (25 bp)
GCCTATCTGCACCTGTACGTAGGAA
LOC_Os03g12120
Target Sequence 
TACCGTGACCGGGTAGTTCATGACAGGTGGAACGAGAGATCTGGCACAGATTGGAAGACAAAGATAGGAAAGCTCCTGAT
GAATGGGTATTCCGAGGGGCATTTGGTCCTATCTCACTTTCCAACTAAAGTTGGGAAAATAGAAGATGACACCGAAATCA
AACAGGAGGATCCTCTCTGAGTTATCCCCTGTCTTGTATATGCGCTTGGTAATCCTGCAAAGTTATAACCTTTAGCAGTA
AAATGGCTAATGCCACCCCCCTTCTTCATGTGGGCTTGTAGAGTTGTTGTAGTCATCATTATAATTCAGAAGGCTTACAA
AGAATGAACACAGGGGTGCCATGTGTAGCCTATCTGCACCTGTACGTAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis