Browse Element(s) Details


Os.49233.1.S1_at

Description gb:AK068287.1
DB_XREF= gi:32978305
TID=Os.49233.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149F18, full insert sequence.
FL= gb:AK068287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g202601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20239Os.50578.1.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.1.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_x_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.50578.2.S1_at11/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36393.1.S1_at3/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.46050.1.A1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.11220.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.25740.1.S1_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.26930.1.S1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20239Os.36149.1.S1_x_at1/1111+11663061..11683420expressed protein
LOC_Os11g20260OsAffx.22516.1.S1_at2/1111+11683050..11687219retrotransposon protein, putative, unclassified
LOC_Os11g20260Os.49233.1.S1_at1/1111+11683050..11687219retrotransposon protein, putative, unclassified
LOC_Os11g20270NANA11+11687790..11689952retrotransposon protein, putative, unclassified
LOC_Os11g20280NANA11+11696259..11696621hypothetical protein
LOC_Os11g20290NANA11+11700854..11706670retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.1.S1_at8/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.5.S1_x_at5/1111+11706992..11710514retrotransposon protein, putative, unclassified
LOC_Os11g20300Os.31312.2.S1_x_at4/1111+11706992..11710514retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49233.1.S1_at--723--4071Chr12:12469784..12469808 (25 bp)
CGAGTAGCAGGTGCGACGGTCTCAC
NONE
Os.49233.1.S1_at--1122--3691Chr12:12469684..12469708 (25 bp)
CTAGCAATAGGAGTGATGCCATCCA
NONE
Os.49233.1.S1_at--404--8091Chr12:12469642..12469666 (25 bp)
GGAGCGGTGGAGTCTTCGTCCTCGA
NONE
Os.49233.1.S1_at--498--7551Chr12:12469543..12469567 (25 bp)
GTGGCCTCGACCTCTAGCGAGCTCA
NONE
Os.49233.1.S1_at--190--6891Chr12:12469507..12469531 (25 bp)
GTATTTGCGGTGATTGATTTCATTG
NONE
Os.49233.1.S1_at--1078--6272Chr11:11684281..11684305 (25 bp)
GATGTAGACATCGTTCTTTGATTTT
LOC_Os11g20260
Os.49233.1.S1_at--594--10611Chr12:12469426..12469450 (25 bp)
TTCTGGAACCGAGTCGGACCCAACG
NONE
Os.49233.1.S1_at--103--6111Chr12:12469416..12469440 (25 bp)
GAGTCGGACCCAACGAACTATGCAT
NONE
Os.49233.1.S1_at--199--4111Chr12:12469403..12469427 (25 bp)
CGAACTATGCATACGGTTTGCACAA
NONE
Os.49233.1.S1_at--589--3971Chr12:12469390..12469414 (25 bp)
CGGTTTGCACAAATCGCTCAGGACA
NONE
Os.49233.1.S1_at--279--5131Chr12:12469384..12469408 (25 bp)
GCACAAATCGCTCAGGACATGGAAA
NONE
Target Sequence 
CGAGTAGCAGGTGCGACGGTCTCACCATGGACGAGCAGCGGGAGCGGCGGCGTCCTCGTCCTCCGGCGAGTAGCGGGAGC
GGTAGCGTCCTCGTCCTCAGCTAGCAATAGGAGTGATGCCATCCAGTGGCGTCGGAGCAGCGGGAGCGGTGGAGTCTTCG
TCCTCGACGAGCAAGGAGCAGCGAGAGCGGCGATGGCCTCGGCCTCGGGCCCGGCGGCAGTGGCGGCGTCCCCGACGAGC
AGTGGCCTCGACCTCTAGCGAGCTCAGCATTCTGTTAGTATTTGCGGTGATTGATTTCATTGATGTAGACATCGTTCTTT
GATTTTGATTTTGTTTTTTTTCTCGTCAACTTTTTTTTTTCTGGAACCGAGTCGGACCCAACGAACTATGCATACGGTTT
GCACAAATCGCTCAGGACATGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis