Browse Element(s) Details


Os.49253.1.S1_at

Description gb:AK070606.1
DB_XREF= gi:32980630
TID=Os.49253.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056D08, full insert sequence.
FL= gb:AK070606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1239011/11Galactoside-binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12350Os.54811.1.S1_at11/116+6690065..6694064Transmembrane amino acid transporter protein, expressed
LOC_Os06g12360OsAffx.15386.1.S1_at11/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12360OsAffx.27652.1.S1_x_at1/116+6695667..6699783RWP-RK domain containing protein, expressed
LOC_Os06g12370Os.51794.1.S1_x_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12370Os.51794.1.S1_at10/116+6700281..6703417Cell division protein ftsH homolog, putative, expressed
LOC_Os06g12380OsAffx.18105.2.A1_at11/116+6711479..6712222hypothetical protein
LOC_Os06g12390Os.49253.1.S1_at11/116+6715188..6720901Galactoside-binding lectin family protein, expressed
LOC_Os06g12400Os.17425.1.S1_at11/116+6724321..6733446PHD-finger family protein, expressed
LOC_Os06g12410Os.9333.1.A1_s_at11/116+6735134..6736797GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g12430OsAffx.15388.1.S1_at11/116+6740343..6740946hypothetical protein
LOC_Os06g12440OsAffx.28657.2.S1_at11/116+6742784..6743850Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49253.1.S1_at--497--7511Chr06:6720315..6720339 (25 bp)
GTGGTTGCACATTACCAGGAGCCAA
LOC_Os06g12390
Os.49253.1.S1_at--26--5871Chr06:6720333..6720357 (25 bp)
GAGCCAAGGGACATGATGTGCCTAT
LOC_Os06g12390
Os.49253.1.S1_at--709--7271Chr06:6720350..6720374 (25 bp)
GTGCCTATGGGACAAATTTCTGAAA
LOC_Os06g12390
Os.49253.1.S1_at--598--8111Chr06:6720418..6720442 (25 bp)
GGACTAATCCGACCATATATTTTGA
LOC_Os06g12390
Os.49253.1.S1_at--7--9931Chr06:6720447..6720471 (25 bp)
TACTGTATAGCCATGGCCTGCTGAC
LOC_Os06g12390
Os.49253.1.S1_at--772--1811Chr06:6720493..6720517 (25 bp)
ACGCCACAACCCCATGCAAGAGGAG
LOC_Os06g12390
Os.49253.1.S1_at--527--5331Chr06:6720625..6720649 (25 bp)
GAAGTCTCACCACCATATTTTGTAG
LOC_Os06g12390
Os.49253.1.S1_at--899--8711Chr06:6720654..6720678 (25 bp)
TGTAGGTTTCCTATTTGGGCATATA
LOC_Os06g12390
Os.49253.1.S1_at--467--7951Chr06:6720746..6720770 (25 bp)
GGATACACCGGCAATTACACTTTTA
LOC_Os06g12390
Os.49253.1.S1_at--560--2011Chr06:6720848..6720872 (25 bp)
ACTCATTGTACAATCCACTTCCTAT
LOC_Os06g12390
Os.49253.1.S1_at--69--2071Chr06:6720864..6720888 (25 bp)
ACTTCCTATCCACGGCATACCTGAA
LOC_Os06g12390
Target Sequence 
GTGGTTGCACATTACCAGGAGCCAAGGGACATGATGTGCCTATGGGACAAATTTCTGAAAACAAAACGAGGAACATGTTG
CAAGGAGTAACGGGGGAGTAACAGGACTAATCCGACCATATATTTTGATGGCTACTGTATAGCCATGGCCTGCTGACACC
AACGACAAGCTCGGCACAACGCCACAACCCCATGCAAGAGGAGCAGGCAACAAAGTNTTAACCTTGCTTATTTTTGGTGG
TTGCAGAATCAATAGGCAACGAAGTTTTGAATATCATTCACAGTCATTTTTGTCCGCGGGGAAAGAGATTGAAGTCTCAC
CACCATATTTTGTAGAAGATGTAGGTTTCCTATTTGGGCATATAGGTAGGGAGGTGTTGCTTAGTTGCTTGCAGTGTGGC
TNCTTGTAACATATCTTTCTAGAAAAACGTAGGATACACCGGCAATTACACTTTTAGGGTAGATGCAGAGGCAGTANTAC
CATTCTTNTCCTAGGAATGCATCCTGTATCTGATGTAAAGCTATTTGACAACTACTCATTGTACAATCCACTTCCTATCC
ACGGCATACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis