Browse Element(s) Details


Os.49267.1.S1_at

Description gb:AK059091.1
DB_XREF= gi:32969109
TID=Os.49267.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-B12, full insert sequence.
FL= gb:AK059091.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g617101/11Coatomer delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61660NANA1+36000515..36006468retrotransposon protein, putative, unclassified
LOC_Os01g61670Os.11151.1.S1_a_at10/111+36009166..36012603expressed protein
LOC_Os01g61680Os.28176.1.S1_at11/111+36013258..36014645expressed protein
LOC_Os01g61680Os.28176.2.S1_x_at7/111+36013258..36014645expressed protein
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49267.1.S1_at--512--5191NONE
GCAATCCTATTCAGTTCTCCATAGC
NONE
Os.49267.1.S1_at--202--3451NONE
CAGTTCTCCATAGCTAGCTGAAGAG
NONE
Os.49267.1.S1_at--463--5531Chr08:25452455..25452479 (25 bp)
GAAACTAATGAACTTACCAGGCTGA
NONE
Os.49267.1.S1_at--372--6311Chr08:25452348..25452372 (25 bp)
GATGAGAAATCTTCACTCTCTCTCC
NONE
Os.49267.1.S1_at--911--2991Chr08:25452266..25452290 (25 bp)
AATGCAAATTCTCCTTGGTACTAGA
NONE
Os.49267.1.S1_at--540--8111Chr08:25452189..25452213 (25 bp)
GGACTCCTGGTTGCCAGTACTACTT
NONE
Os.49267.1.S1_at--626--3731Chr08:25452170..25452194 (25 bp)
CTACTTCTCCAACCTATGCTGATAG
NONE
Os.49267.1.S1_at--297--3091Chr08:25452143..25452167 (25 bp)
AATAATGGCCAGGAAGCTGATATTT
NONE
Os.49267.1.S1_at--72--2792Chr08:25452084..25452108 (25 bp)
AAGAGGTGGTGACCCACAAGGCCAA
NONE
Os.49267.1.S1_at--646--5551Chr08:25452039..25452063 (25 bp)
GAAACCTGCATGAAGATATGGTCAG
NONE
Os.49267.1.S1_at--934--2951Chr08:25451947..25451971 (25 bp)
AATGGCATCAAGTGTGTCGTCCCTC
NONE
Target Sequence 
GCAATCCTATTCAGTTCTCCATAGCTAGCTGAAGAGAAGGAGAAGAATAATCCAATTACCGAAACTAATGAACTTACCAG
GCTGATATATCATGANCTGTTGNNATNCAGTGTAGCTANCAANGNNCAGAACAGAAGAAGAAGNCCATGATTCAGCTTGN
TCTGGATGATGAGAAATCTTCACTCTCTCTCCCAACTCCAATCCCCCAGNTTNTACAGAANTCAGCAAAGGGTCTGAAGA
ACAGAAGGAAATGCAAATTCTCCTTGGTACTAGAGTAGAGACAAGAATAATGAAGAACAGCAGAAATGATGGGCNGGAGA
TGTCCTGGACTCCTGGTTGCCAGTACTACTTCTCCAACCTATGCTGATAGATAATAATGGCCAGGAAGCTGATATTTAAG
ACTGGATGAGAAGAGTAGGATTAATAGCAAGAAGAGGTGGTGACCCACAAGGCCAAAGAAGCAAAGGAAAGCAAATGAAA
CCTGCATGAAGATATGGTCAGGAAAAGGATGACCAAAGAAAGCAGAGTTTAAAAGGAAGCAAAGCAAAAAAGAAAAGAAA
AATCGATCAATGGCATCAAGTGTGTCGTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis