Browse Element(s) Details


Os.49352.1.S1_at

Description gb:AK107273.1
DB_XREF= gi:32992482
TID=Os.49352.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A02, full insert sequence.
FL= gb:AK107273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1557011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15530OsAffx.18867.1.S1_at11/1111+8797691..8798201hypothetical protein
LOC_Os11g15540NANA11+8799316..8802259hypothetical protein
LOC_Os11g15550OsAffx.10020.1.S1_x_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_at2/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15550OsAffx.21264.1.S1_x_at1/1111+8803833..8804369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.17297.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15560Os.47371.1.S1_at1/1111+8805054..8811797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g15570Os.49352.1.S1_at11/1111+8820635..8822141expressed protein
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49352.1.S1_at--497--8371Chr11:8821572..8821596 (25 bp)
GGCGTCAATTGCGATTGCCAGCGGC
LOC_Os11g15570
Os.49352.1.S1_at--610--4692Chr11:8821765..8821789 (25 bp)
GCGGCACCAATGTGAGGGTGATCAC
LOC_Os11g15570
Os.49352.1.S1_at--954--8831Chr11:8821783..8821807 (25 bp)
TGATCACGACGGATCCCGCGGAGGC
LOC_Os11g15570
Os.49352.1.S1_at--691--891Chr11:8821837..8821861 (25 bp)
AGGCCGCCATCGCTACCGCGGTGAA
LOC_Os11g15570
Os.49352.1.S1_at--834--2891Chr11:8821881..8821905 (25 bp)
AAGGAAGGGCTTGCATTGTTGGTAA
LOC_Os11g15570
Os.49352.1.S1_at--47--6151Chr11:8821926..8821950 (25 bp)
GAGGTACAAGCTAAGGCGGCTTAAT
LOC_Os11g15570
Os.49352.1.S1_at--926--4671Chr11:8821941..8821965 (25 bp)
GCGGCTTAATTAGTTCAGTGTGGTA
LOC_Os11g15570
Os.49352.1.S1_at--799--3451Chr11:8821956..8821980 (25 bp)
CAGTGTGGTAACTTCAGGGTAGGTA
LOC_Os11g15570
Os.49352.1.S1_at--471--7851Chr11:8821973..8821997 (25 bp)
GGTAGGTAACATTTTGGTGACTCAA
LOC_Os11g15570
Os.49352.1.S1_at--119--7931Chr11:8822001..8822025 (25 bp)
GGATTGCACGGTAAATTGGGTAACA
LOC_Os11g15570
Os.49352.1.S1_at--687--4072Chr11:8822101..8822125 (25 bp)
CGAGATGTGCTAATCAATTGCTGAT
LOC_Os11g15570
Target Sequence 
GGCGTCAATTGCGATTGCCAGCGGCTCGAGGGGGTTCTCGGGATGATCCCGGGCGCCAAGAGGATGATAATGGGGCACAC
GATTCAGACCGAGGGGATCAATGCGGTGTGCGGTGCGCAGGCGGTGAGGGTGGATGTGGGATTGTCTAGAGGATGCGGTA
ATGGGCTGCCAGAGGTGCTCGAGATCAATGGTGGCGGCACCAATGTGAGGGTGATCACGACGGATCCCGCGGAGGCCTGG
CAGTACCGGAAGCAGGGGGCGGAGAAGGCCGCCATCGCTACCGCGGTGAAGGAGAAGAAGGGGGAGGTAAAGGAAGGGCT
TGCATTGTTGGTAAGGGAGAGCCATGGGTTGAAAGAGGTACAAGCTAAGGCGGCTTAATTAGTTCAGTGTGGTAACTTCA
GGGTAGGTAACATTTTGGTGACTCAATTGGGATTGCACGGTAAATTGGGTAACAAGGATAGAAAGGATGATATGTTGAAA
CTGTTTGTGGATNNAATAATGGAAAGAAACCATTATCATCATTATTTATCGAGATGTGCTAATCAATTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis