Browse Element(s) Details


Os.49357.1.S1_at

Description gb:AK109498.1
DB_XREF= gi:32994707
TID=Os.49357.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H03, full insert sequence.
FL= gb:AK109498.1 gb:AK109488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5584011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55790Os.26004.2.S1_at11/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.1.S1_x_at4/112+34152482..34155627hypothetical protein
LOC_Os02g55790Os.26004.3.S1_x_at3/112+34152482..34155627hypothetical protein
LOC_Os02g55800OsAffx.3081.1.S1_at10/112+34158581..34160484hypothetical protein
LOC_Os02g55810Os.12270.1.S1_at9/112+34161819..34162475expressed protein
LOC_Os02g55820OsAffx.3082.1.S1_at9/112+34166241..34168129hypothetical protein
LOC_Os02g55830Os.34131.1.S1_s_at10/112+34172692..34174827hAT family dimerisation domain containing protein
LOC_Os02g55840Os.49357.1.S1_at11/112+34176218..34178715expressed protein
LOC_Os02g55840Os.17702.2.S1_x_at1/112+34176218..34178715expressed protein
LOC_Os02g55850OsAffx.24887.1.S1_at11/112+34183635..34184018hypothetical protein
LOC_Os02g55860NANA2+34185762..34188116retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g55870Os.20580.1.S1_at11/112+34193672..34197835Heparanase-like protein 3 precursor, putative, expressed
LOC_Os02g55880OsAffx.3083.1.S1_at9/112+34201091..34203972EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49357.1.S1_at--77--3431Chr02:34177264..34177496 (25 bp)
CAGACGGCGAGGGATCAAGCATCAT
LOC_Os02g55840
Os.49357.1.S1_at--491--4971Chr02:34177490..34177514 (25 bp)
GCATCATGCATGGTAGGCCTAGGGT
LOC_Os02g55840
Os.49357.1.S1_at--651--7711Chr02:34177511..34177535 (25 bp)
GGGTGATTTGTTCGCTATGCATTCA
LOC_Os02g55840
Os.49357.1.S1_at--92--9591Chr02:34177634..34177655 (22 bp)
TCATTGTGACCTATGTTCCTGGACT
LOC_Os02g55840
Os.49357.1.S1_at--283--10671Chr02:34177646..34177670 (25 bp)
TTCCTGGACTGCTCATGTGTCTATA
LOC_Os02g55840
Os.49357.1.S1_at--442--10171Chr02:34177669..34177693 (25 bp)
TATAGAAGATTGCACTCAGCCCCTG
LOC_Os02g55840
Os.49357.1.S1_at--402--7971Chr02:34177693..34177717 (25 bp)
GGATCGCAGTAGAATCTTCCTTGAC
LOC_Os02g55840
Os.49357.1.S1_at--1097--631Chr02:34178485..34178509 (25 bp)
ATGCATCATCCTCGGCTATAATTCG
LOC_Os02g55840
Os.49357.1.S1_at--929--10171Chr02:34178501..34178525 (25 bp)
TATAATTCGTCTTCCGCCGATGCAA
LOC_Os02g55840
Os.49357.1.S1_at--513--3111Chr02:34178563..34178587 (25 bp)
AATATGTATCTGTGCCTGAGTCTCT
LOC_Os02g55840
Os.49357.1.S1_at--439--2111Chr02:34178591..34178615 (25 bp)
ACATGTGTGGGTTTTTTACTCGACA
LOC_Os02g55840
Target Sequence 
CAGACGGCGAGGGATCAAGCATCATGCATGGTAGGCCTAGGGTGATTTGTTCGCTATGCATTCATTGTGACCTATGTTCC
TGGACTGCTCATGTGTCTATATAGAAGATTGCACTCAGCCCCTGGATCGCAGTAGAATCTTCCTTGACTAAGCTTAATTG
TCTATTCTTTGGGTNNGNANNNNNNNNNCNNANNANNNNNANNTNNGNANNAANCNTNTNANNNTNNAGGCGCATGCATC
ATCCTCGGCTATAATTCGTCTTCCGCCGATGCAACTAGAGCAGCGATGACTAGTGTTTTAATTGTACAATCAATATGTAT
CTGTGCCTGAGTCTCTGTAACATGTGTGGGTTTTTTACTCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis