Browse Element(s) Details


Os.49390.1.A1_at

Description gb:AK120828.1
DB_XREF= gi:37990451
TID=Os.49390.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023019F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019F02, full insert sequence.
FL= gb:AK120828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3898011/11Chloride channel protein CLC-f, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein
LOC_Os08g38970OsAffx.6144.1.S1_at11/118+24501144..24504104expressed protein
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005247molecular_functionvoltage-gated chloride channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49390.1.A1_at--817--5331Chr08:24511468..24511492 (25 bp)
GAAGACGTAAGGTCCTTGGCCTTCT
LOC_Os08g38980
Os.49390.1.A1_at--871--9231Chr08:24511480..24511504 (25 bp)
TCCTTGGCCTTCTTCATTATGATTC
LOC_Os08g38980
Os.49390.1.A1_at--903--3391Chr08:24512344..24512368 (25 bp)
CAGCAGTCAGCTGTTAATGGCCACT
LOC_Os08g38980
Os.49390.1.A1_at--998--2591Chr08:24512466..24512490 (25 bp)
AACCTCCTCACTCAAAAAATATCCT
LOC_Os08g38980
Os.49390.1.A1_at--302--9591Chr08:24512507..24512531 (25 bp)
TCTTGGAGTTGCCACATATGCACAT
LOC_Os08g38980
Os.49390.1.A1_at--876--7391Chr08:24512558..24512582 (25 bp)
GTGATGGTGTGATTCGCTTTTGTTA
LOC_Os08g38980
Os.49390.1.A1_at--96--311Chr08:24512616..24512640 (25 bp)
ATACTGGGTACACTTTGGTCTGTCC
LOC_Os08g38980
Os.49390.1.A1_at--235--8571Chr08:24512631..24512655 (25 bp)
TGGTCTGTCCCGCAAAAAAGCATTG
LOC_Os08g38980
Os.49390.1.A1_at--1056--6811Chr08:24512668..24512692 (25 bp)
GTTTATTGTTTCTGTCCGATCTTCT
LOC_Os08g38980
Os.49390.1.A1_at--667--10591Chr08:24512689..24512713 (25 bp)
TTCTGCTGCACGTCAATTACTGGAT
LOC_Os08g38980
Os.49390.1.A1_at--739--2271Chr08:24512719..24512743 (25 bp)
AAATCTGCGGACCAGTTACTCCTGT
LOC_Os08g38980
Target Sequence 
GAAGACGTAAGGTCCTTGGCCTTCTTCATTATGATTCAATAGGGTGGTGCTTAAGGGAAGAGCTTGAGCGGTGGAAAGCC
ATTTATCAAAGAGAGAATTTCCAGCAGTCAGCTGTTAATGGCCACTGAGCAAAAAGAAGTGCTGAAGTTTTGGTTGTACG
TTTTAGTGAAGAGAAATACCAAATTTATAAAGTGACATTTCAACATGATTAGGGTTAACTTAAAACCTCCTCACTCAAAA
AATATCCTCGTCAAATGTAAAGTTTCTTGGAGTTGCCACATATGCACATTTTTGTGCAGAGAANATATATAAGCGGTGAT
GGTGTGATTCGCTTTTGTTANNNNNNNCTGTTTCGAAGTTCTGACATGACAGTATACTGGGTACACTTTGGTCTGTCCCG
CAAAAAAGCATTGCAAATGGTGACTGTTTATTGTTTCTGTCCGATCTTCTGCTGCACGTCAATTACTGGATAATGCAAAT
CTGCGGACCAGTTACTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49390.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis