Browse Element(s) Details


Os.49414.1.S1_at

Description gb:AK100913.1
DB_XREF= gi:32986122
TID=Os.49414.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133A14, full insert sequence.
FL= gb:AK100913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3192011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31881Os.52577.1.S1_at1/112+18828815..18830299NA
LOC_Os02g31890OsAffx.24525.1.S1_at11/112+18833325..18836550zinc finger family protein, putative
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49414.1.S1_at--394--10271Chr02:18856143..18856167 (25 bp)
TTTGCTTCCGTTTTGGTTCAATCAA
LOC_Os02g31920
Os.49414.1.S1_at--337--8611Chr02:18856178..18856202 (25 bp)
TGGTGCTTCGGTATACTGCTACTCA
LOC_Os02g31920
Os.49414.1.S1_at--502--7511Chr02:18856215..18856239 (25 bp)
GTGGACATAAATTTGCTTCCTGGTT
LOC_Os02g31920
Os.49414.1.S1_at--304--3911Chr02:18856234..18856258 (25 bp)
CTGGTTCCACATTCTTCACAAACAT
LOC_Os02g31920
Os.49414.1.S1_at--140--2571Chr02:18856339..18856363 (25 bp)
AACTGTTGGCAGAATCGCTGGTAAC
LOC_Os02g31920
Os.49414.1.S1_at--1091--1012Chr02:18856407..18856431 (25 bp)
AGGTTTTAGCCCTTGGCATCTTCCA
LOC_Os02g31920
Os.49414.1.S1_at--245--431Chr02:18856424..18856448 (25 bp)
ATCTTCCAAGCCATTTTGCTTTCAC
LOC_Os02g31920
Os.49414.1.S1_at--541--2971Chr02:18856488..18856512 (25 bp)
AATGTCGGTGATCAGTTTTCCTGGA
LOC_Os02g31920
Os.49414.1.S1_at--330--2391Chr02:18856574..18856598 (25 bp)
AAACTAAGGCTATTCAGACCCATAT
LOC_Os02g31920
Os.49414.1.S1_at--1156--3391Chr02:18856588..18856612 (25 bp)
CAGACCCATATTCACCTATTTACAG
LOC_Os02g31920
Os.49414.1.S1_at--602--10172Chr08:14152966..14152992 (24 bp)
TATAAGTTAGGTCTGCTGCTTCATT
NONE
Target Sequence 
TTTGCTTCCGTTTTGGTTCAATCAATTCATACAATTGGTGCTTCGGTATACTGCTACTCATTTGGCACCCTTGTGGACAT
AAATTTGCTTCCTGGTTCCACATTCTTCACAAACATATGCACACAAGTTGTTTGTACAATGCTTGGCAAGATGAATCTTT
GTGATTATAGTGTATTTGCTATTTGTGTTATCAACTAACTGTTGGCAGAATCGCTGGTAACTGTATTGCCATGGCCCTGC
TCACCAGTAACTGTATTGCCATTCAGGTTTTAGCCCTTGGCATCTTCCAAGCCATTTTGCTTTCACATATTCAGAATTGA
CTGAAATTCATTTATCGTTACAACTAATGTCGGTGATCAGTTTTCCTGGAAAATATTTGTTGAAAATATATGTAACAGCA
CCCAAATGTATTAGGGTGTGGAAAATGCTTCAAACTAAGGCTATTCAGACCCATATTCACCTATTTACAGTGAGCATTAG
GGTCATTTTATAGAAAACGTTGTCGAGGAGATCTAGAAGTTATTATAAGTTAGGTCTGCTGCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis