Browse Element(s) Details


Os.49433.1.S1_x_at

Description gb:AK066519.1
DB_XREF= gi:32976537
TID=Os.49433.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069M18, full insert sequence.
FL= gb:AK066519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g395301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49433.1.S1_x_at--603--7471Chr11:3426237..3426261 (25 bp)
GTGTGGTACCACTCTGTTGTGCCAT
NONE
Os.49433.1.S1_x_at--175--3691Chr12:9675751..9675829 (24 bp)
CTTTGTCCTCACTCTTAAGCATGAT
NONE
Os.49433.1.S1_x_at--1105--6731Chr11:3426661..3426685 (25 bp)
GTTCATGCTCAGTTTTGTGGATTCA
NONE
Os.49433.1.S1_x_at--524--7651Chr11:3426830..3426854 (25 bp)
GGGAGATTCATCTTGCAGGACACAA
NONE
Os.49433.1.S1_x_at--797--951Chr11:3426846..3426870 (25 bp)
AGGACACAATTCATCTTCTTTACCA
NONE
Os.49433.1.S1_x_at--510--312Chr11:3427998..3428022 (25 bp)
ATACCACCTCAGTTACTGCCAAAAG
NONE
Os.49433.1.S1_x_at--787--5251Chr11:3428029..3428053 (25 bp)
GAATCGCCTTTCAAAAGCTGAGCCA
NONE
Os.49433.1.S1_x_at--230--8671Chr11:3428144..3428168 (25 bp)
TGTGTATTTTTGTGCCGTTTTGGTA
NONE
Os.49433.1.S1_x_at--57--6232Chr11:3428229..3428253 (25 bp)
GAGGCCTCTCTATATACGATATTAC
NONE
Os.49433.1.S1_x_at--432--7051Chr11:3428290..3428314 (25 bp)
GTAAGTTACTCCTTGGCAAACTCCA
NONE
Os.49433.1.S1_x_at--555--1991Chr11:3428309..3428333 (25 bp)
ACTCCAATGGTTTATCGGCTTTACA
NONE
Target Sequence 
GTGTGGTACCACTCTGTTGTGCCATCCTGCCGAGGGACCCATCTAGCTTTGTCCTCACTCTTAAGCATGATTCATGTTCA
TGCTCAGTTTTGTGGATTCAAGTTTGAAGAACACAAACAATATGCAGTTTCAGCAGGGAGATTCATCTTGCAGGACACAA
TTCATCTTCTTTACCACAGAGATTCCTTTCTGATGTATATAATGGTGAATAGAGAAACTCATGTAAGAGCAATACCACCT
CAGTTACTGCCAAAAGATCAGAGAATCGCCTTTCAAAAGCTGAGCCAGCATTGCTGCTCTTGAAAAACACATCTATTTCT
ACTATTTTTGTTTGGTGATATTTGTATCCCAAAACCTATATTTAGACTATATCATGGTGTGTATTTTTGTGCCGTTTTGG
TAATTGAGACATTTTTTCTCTATTGGTCATGATTTATGCTACATAAAAGAGACTGTACATGGGAGGCCTCTCTATATACG
ATATTACTTCTCTTATTTTGTCATTAAAATCATTAGTACAGTTGTAAGTTACTCCTTGGCAAACTCCAATGGTTTATCGG
CTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49433.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis