Browse Element(s) Details


Os.49435.1.S1_at

Description gb:AK121803.1
DB_XREF= gi:37991426
TID=Os.49435.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097J24, full insert sequence.
FL= gb:AK105451.1 gb:AK121803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4883011/1165kD microtubule associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48770Os.11812.1.S1_at11/112+29844503..29846574SAM dependent carboxyl methyltransferase family protein, expressed
LOC_Os02g48780NANA2+29847702..29848589BAG domain containing protein, expressed
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0000911biological_processcytokinesis by cell plate formation
GO:0001578biological_processmicrotubule bundle formation
GO:0007020biological_processmicrotubule nucleation
GO:0031116biological_processpositive regulation of microtubule polymerization
GO:0051322biological_processanaphase
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005819cellular_componentspindle
GO:0005874cellular_componentmicrotubule
GO:0009524cellular_componentphragmoplast
GO:0009536cellular_componentplastid
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49435.1.S1_at--551--7551Chr02:29875073..29875097 (25 bp)
GGGCCATTCGGAACACGGGTCAATC
LOC_Os02g48830
Os.49435.1.S1_at--43--3051Chr02:29875094..29875118 (25 bp)
AATCCCTACAGAGTGACCAGTGCAA
LOC_Os02g48830
Os.49435.1.S1_at--1058--2371Chr02:29875141..29875165 (25 bp)
AAACGGTGGCGCATCAAACGGGACA
LOC_Os02g48830
Os.49435.1.S1_at--1113--10011Chr02:29875171..29875195 (25 bp)
TAGAAGGCTATCAACCGGCAATCAG
LOC_Os02g48830
Os.49435.1.S1_at--43--5951Chr02:29875204..29875228 (25 bp)
GAGCAAGAGTACTGGCCGGTCTGCT
LOC_Os02g48830
Os.49435.1.S1_at--310--5411Chr02:29875301..29875325 (25 bp)
GAAGCTGCAGACTCATCCACCGAAA
LOC_Os02g48830
Os.49435.1.S1_at--38--4111Chr02:29875321..29875345 (25 bp)
CGAAAACTTCGACGCTGATCCGGTT
LOC_Os02g48830
Os.49435.1.S1_at--697--6531Chr02:29875386..29875410 (25 bp)
GATTTCTGTCTTTTTTGACACCCTT
LOC_Os02g48830
Os.49435.1.S1_at--99--1391Chr02:29875447..29875471 (25 bp)
AGACCTGTCGTTTCTTTCTGTTGAC
LOC_Os02g48830
Os.49435.1.S1_at--112--6831Chr02:29875524..29875548 (25 bp)
GTTTAGCTCTAATCTTGCCGTCAGA
LOC_Os02g48830
Os.49435.1.S1_at--893--131Chr02:29875555..29875579 (25 bp)
ATTAGCCTCTCGTAAGTTTTATTGG
LOC_Os02g48830
Target Sequence 
GGGCCATTCGGAACACGGGTCAATCCCTACAGAGTGACCAGTGCAAAGAAGGTGGCTGGCACAAAGCCAAACGGTGGCGC
ATCAAACGGGACACCGAGTAGAAGGCTATCAACCGGCAATCAGCTGAACGAGAGCAAGAGTACTGGCCGGTCTGCTGGTA
AGGATGACAAGAAAGGCGCGTCGAAGAACACGGCAACTTCACTGAACGAAGCAGCTCCTGCAGACAAGGAAGCTGCAGAC
TCATCCACCGAAAACTTCGACGCTGATCCGGTTCCTGGCTCGACATGATCTCGATGTGGTACAGATGAATGGTGATTTCT
GTCTTTTTTGACACCCTTTATTGTGTTCGTTGTAGTATCTTGTTGTTAGGTTTTAGACCTGTCGTTTCTTTCTGTTGACT
GGTGGTTAGTGCCTGAGTGGTGTTCAAACATATGGGCGGTTTATATTAGCTGTTTAGCTCTAATCTTGCCGTCAGAAGTA
AAATTAGCCTCTCGTAAGTTTTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis