Browse Element(s) Details


Os.49437.1.S1_at

Description gb:AK107882.1
DB_XREF= gi:32993091
TID=Os.49437.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D08, full insert sequence.
FL= gb:AK107882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0369010/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g019701/11SWIRM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g03650OsAffx.576.1.S1_at4/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03650OsAffx.10530.1.S1_at1/119+1831098..1837967transposon protein, putative, unclassified
LOC_Os09g03660NANA9+1838844..1841929retrotransposon protein, putative, unclassified
LOC_Os09g03670OsAffx.17554.1.S1_at11/119+1844736..1845422hypothetical protein
LOC_Os09g03680Os.14374.1.S1_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03680OsAffx.6162.1.S1_s_at11/119+1849573..1858251TPR Domain containing protein, expressed
LOC_Os09g03690Os.49437.1.S1_at10/119+1860957..1863180Myb-like DNA-binding domain containing protein, expressed
LOC_Os09g03700Os.31312.2.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.31312.5.S1_x_at2/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03700Os.28943.1.S1_x_at1/119+1864906..1868249retrotransposon protein, putative, unclassified, expressed
LOC_Os09g03710OsAffx.22492.1.S1_x_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03710OsAffx.22492.1.S1_at1/119+1868998..1874215retrotransposon protein, putative, unclassified
LOC_Os09g03724NANA9+1883879..1884086NA

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Gene Ontology Classification
GO idTypeName
GO:0006338biological_processchromatin remodeling
GO:0016514cellular_componentSWI/SNF complex
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49437.1.S1_at--680--4851Chr09:1861424..1861448 (25 bp)
GCTAGCCCGATGCAACTACATAAAT
LOC_Os09g03690
Os.49437.1.S1_at--849--3552Chr09:1862465..1862489 (25 bp)
CATTACTTTCGGTGGGATTTTGGCA
LOC_Os09g03690
Os.49437.1.S1_at--360--5171Chr09:1862487..1862511 (25 bp)
GCAAGGCCTATATACACCATTACAG
LOC_Os09g03690
Os.49437.1.S1_at--907--1731Chr09:1862502..1862635 (25 bp)
ACCATTACAGGATGCTAGCGGACAA
LOC_Os09g03690
Os.49437.1.S1_at--1094--1591Chr09:1862627..1862651 (25 bp)
AGCGGACAAGTTATCCAGTGCCTGA
LOC_Os09g03690
Os.49437.1.S1_at--450--5471Chr09:1862650..1862674 (25 bp)
GAACTCTGCTTTATCTAACCTGGTG
LOC_Os09g03690
Os.49437.1.S1_at--18--9811Chr09:1862665..1862689 (25 bp)
TAACCTGGTGGCTGACATTGACAAC
LOC_Os09g03690
Os.49437.1.S1_at--411--2371Chr09:1862755..1862779 (25 bp)
AAACCATTTGATTCACATCCCTTCA
LOC_Os09g03690
Os.49437.1.S1_at--676--8851Chr09:1862782..1862806 (25 bp)
TGATCCCACCTGGTTTCTTGCTTAG
LOC_Os09g03690
Os.49437.1.S1_at--279--3632Chr09:1862798..1862976 (25 bp)
CTTGCTTAGGTAGCTTCATGACTAT
LOC_Os09g03690
Os.49437.1.S1_at--51--4771Chr09:1863171..1863195 (25 bp)
GCTGCACTGAGCAAGAGCGTTCTAT
NONE
Target Sequence 
GCTAGCCCGATGCAACTACATAAATGCAAATAAATGCAAGCTGCAGTAGTAAACATTACTTTCGGTGGGATTTTGGCAAG
GCCTATATACACCATTACAGGATGCTAGCGGACAAGTTATCCAGTGCCTGAACTCTGCTTTATCTAACCTGGTGGCTGAC
ATTGACAACAAATCTATTTACAACACTCTATTATTAGTCTATTACCTGACTCTGGAAAACAACCATCAACTGCAAAACCA
TTTGATTCACATCCCTTCACCTGATCCCACCTGGTTTCTTGCTTAGGTAGCTTCATGACTATGACAAAGGAAATTTGGAT
GCAGGCATGTCACAAACTGATTTCATCATTATGGAATCTGCAGAAATTCCAGGCTTTGGTGGTACTAGCTGGACTGACCA
GGAGACCTTGCTTCTTTTGGAAGCTTTAGTAATTTTGCAAGCAAAATGGGGTGACATTGCAGAGCATGTTGATACAAAAA
CCAAAGCACAATGCATGCTGCACTGAGCAAGAGCGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis