Browse Element(s) Details


Os.49445.1.S1_at

Description gb:AK068929.1
DB_XREF= gi:32978953
TID=Os.49445.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169B16, full insert sequence.
FL= gb:AK068929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5555011/11F-box family protein, putative, expressed
LOC_Os04g524792/11expressed protein
LOC_Os10g127602/11retrotransposon protein, putative, unclassified
LOC_Os08g150102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g254872/11Leucine Rich Repeat family protein, expressed
LOC_Os01g093842/11ankyrin-like protein, putative, expressed
LOC_Os07g189701/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g338101/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55520Os.18962.1.S1_at9/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55520Os.9329.1.S1_at6/112+33985177..33990961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g55530Os.24368.1.S1_at11/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55530OsAffx.27328.1.S1_at1/112+33994688..34001352Neurochondrin family protein, expressed
LOC_Os02g55540OsAffx.24885.1.S1_at11/112+34002376..34004220F-box family protein, putative, expressed
LOC_Os02g55550Os.49445.1.S1_at11/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55550Os.45957.3.S1_x_at9/112+34009630..34011435F-box family protein, putative, expressed
LOC_Os02g55560Os.13743.1.S1_at11/112+34020405..34024416DNA-binding protein phosphatase 2C, putative, expressed
LOC_Os02g55570OsAffx.3080.1.S1_at11/112+34025278..34028418Shugoshin C terminus family protein, expressed
LOC_Os02g55580OsAffx.12655.1.S1_at11/112+34030746..34031137hypothetical protein
LOC_Os02g55590Os.6403.1.S1_at11/112+34035669..34040394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006952biological_processdefense response
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49445.1.S1_at--456--251Chr02:34010146..34010170 (25 bp)
ATATCGATGATTCTGGTATTGGCTA
LOC_Os02g55550
Os.49445.1.S1_at--257--6871Chr02:34010131..34010155 (25 bp)
GTATTGGCTATCTGGCTTATTGCAA
LOC_Os02g55550
Os.49445.1.S1_at--558--2391Chr02:34010105..34010129 (25 bp)
AAACTAAGGTCTTTCAGGCTGAACT
LOC_Os02g55550
Os.49445.1.S1_at--341--3491Chr02:34010091..34010115 (25 bp)
CAGGCTGAACTTTGCACCAGCAATA
LOC_Os02g55550
Os.49445.1.S1_at--624--3211Chr02:34010062..34010086 (25 bp)
CAAGAGGGCTTCTCTCGGTGGCAGT
LOC_Os02g55550
Os.49445.1.S1_at--834--7531Chr02:34010045..34010069 (25 bp)
GTGGCAGTTGGTTGCAAGAGTCTTT
LOC_Os02g55550
Os.49445.1.S1_at--969--2771Chr02:34010030..34010054 (25 bp)
AAGAGTCTTTGTACTTTCCACCTTG
LOC_Os02g55550
Os.49445.1.S1_at--211--2051Chr02:34010018..34010042 (25 bp)
ACTTTCCACCTTGTTGATTGCATGA
LOC_Os02g55550
Os.49445.1.S1_at--345--6091Chr02:34009970..34009994 (25 bp)
GAGTACCTTGGCAGGGCCGGATCAT
LOC_Os02g55550
Os.49445.1.S1_at--559--107928Chr11:26187694..26187718 (25 bp)
TTGTTGGGATGCTCTGCTCTAGGAC
NONE
Os.49445.1.S1_at--510--90941Chr11:26187703..26187727 (25 bp)
TGCTCTGCTCTAGGACAGTTTGTTG
NONE
Target Sequence 
ATATCGATGATTCTGGTATTGGCTATCTGGCTTATTGCAAGAAACTAAGGTCTTTCAGGCTGAACTTTGCACCAGCAATA
AGTTCAAGAGGGCTTCTCTCGGTGGCAGTTGGTTGCAAGAGTCTTTGTACTTTCCACCTTGTTGATTGCATGAAAGTAGG
AAGTGTGGAGTGGCTGGAGTACCTTGGCAGGGCCGGATCATTGGAAGAACTTGTGGTAAAGGATTNTNNNTNTAGGAATA
AGTCTTGGCTGGTTGGTCTTGGTCTTGTGGTGCCTTTTTCCTGCTTTTCAGCTTTCTAGGACAGCATCTCTACTTTCAGT
TTGGATGCTCTAGGACAGTTAGGACAGCAGTTTGTTGAGATGCTCTAGGACAGTTTGTTGGGATGCTCTGCTCTAGGACA
GTTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis