Browse Element(s) Details


Os.49468.2.S1_x_at

Description gb:AK073643.1
DB_XREF= gi:32983666
TID=Os.49468.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033053O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033053O06, full insert sequence.
FL= gb:AK073643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6289011/11prenylated rab acceptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49468.2.S1_x_at--1157--10691Chr01:36747411..36747435 (25 bp)
TTGCTTCACGCCAGTTTCAGAACAC
LOC_Os01g62890
Os.49468.2.S1_x_at--829--10391Chr01:36747305..36747329 (25 bp)
TTTTGTCTACCCCATGTGAGTGCCT
LOC_Os01g62890
Os.49468.2.S1_x_at--773--4311Chr01:36747283..36747307 (25 bp)
CCTTCATCGCTGTCTTATGGTCGAA
LOC_Os01g62890
Os.49468.2.S1_x_at--1104--2311Chr01:36747236..36747260 (25 bp)
AAAGTGCTACCTGTTCTGTCAGTGC
LOC_Os01g62890
Os.49468.2.S1_x_at--789--3871Chr01:36747226..36747250 (25 bp)
CTGTTCTGTCAGTGCATCATTGTGG
LOC_Os01g62890
Os.49468.2.S1_x_at--1034--1591Chr01:36747201..36747225 (25 bp)
AGCTGCTTATTGGATGTCTCTGCGG
LOC_Os01g62890
Os.49468.2.S1_x_at--762--951Chr01:36747162..36747186 (25 bp)
AGGACCTACTTCAGTGTGCTTTCGA
LOC_Os01g62890
Os.49468.2.S1_x_at--454--8791Chr01:36747100..36747124 (25 bp)
TGTTACCAAGTTCCATATCTCTGCT
LOC_Os01g62890
Os.49468.2.S1_x_at--66--4451Chr01:36747075..36747099 (25 bp)
GCCTCTTGCGACTCTTTAATTGTGG
LOC_Os01g62890
Os.49468.2.S1_x_at--433--931Chr01:36747038..36747062 (25 bp)
AGGCATGCTATTTTCTCCAGTTTAT
LOC_Os01g62890
Os.49468.2.S1_x_at--29--8571Chr01:36746970..36746994 (25 bp)
TGGATCTCCATAGTTTTAGCTTCTG
LOC_Os01g62890
Target Sequence 
TTGCTTCACGCCAGTTTCAGAACACCTAATCTGAAAGCACGCCTGAACACATTCAGGGAGGAATTTCGAGCAGTATGGCG
GAATTATAGCGAGTTTTAAACGCCCTTTTTGTCTACCCCATGTGAGTGCCTTCATCGCTGTCTTATGGTCGAAAATTGAA
TCTAGCGAAGGGCTTAAAGTGCTACCTGTTCTGTCAGTGCATCATTGTGGAGCTGCTTATTGGATGTCTCTGCGGTGGTG
CAATGTAGAAGGACCTACTTCAGTGTGCTTTCGAATTTCTTGATTTTCTCTGCAGATTTATGTGGTAAAAATGTTACCAA
GTTCCATATCTCTGCTGCCTCTTGCGACTCTTTAATTGTGGGAGATTAAAAATAGGCATGCTATTTTCTCCAGTTTATGG
ATTTGGCTTTAGATTGTGGATTATTCTAGTCCCCCACCACATGGATCTCCATAGTTTTAGCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49468.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis