Browse Element(s) Details


Os.49470.1.S1_at

Description gb:AK069673.1
DB_XREF= gi:32979697
TID=Os.49470.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023027A22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027A22, full insert sequence.
FL= gb:AK069673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4006011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40010Os.52786.1.S1_at10/118+25208257..25211106expressed protein
LOC_Os08g40020Os.55143.1.S1_at11/118+25211862..25213493selenium binding protein, putative, expressed
LOC_Os08g40030OsAffx.6090.1.S1_at11/118+25219037..25220910No apical meristem protein
LOC_Os08g40030Os.51926.1.S1_x_at1/118+25219037..25220910No apical meristem protein
LOC_Os08g40040OsAffx.6091.1.S1_at11/118+25221954..25227290hypothetical protein
LOC_Os08g40050Os.49866.1.S1_at11/118+25227626..25230734retrotransposon protein, putative, unclassified
LOC_Os08g40060Os.49470.1.S1_at11/118+25233344..25234383expressed protein
LOC_Os08g40070NANA8+25237521..25238194hypothetical protein
LOC_Os08g40080NANA8+25241787..25242433expressed protein
LOC_Os08g40090Os.14329.1.S1_at11/118+25244851..25247749leucine-rich repeat family protein, putative, expressed
LOC_Os08g40100Os.18042.1.S1_at11/118+25252520..25254432expressed protein
LOC_Os08g40100Os.48069.1.S1_at1/118+25252520..25254432expressed protein
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49470.1.S1_at--171--2211Chr08:25233886..25233910 (25 bp)
ACAACTTCGACAATGGCGACGCCGC
LOC_Os08g40060
Os.49470.1.S1_at--252--451Chr08:25233832..25233856 (25 bp)
ATCTCGCCGGCGAAAAACCGAAGCT
LOC_Os08g40060
Os.49470.1.S1_at--408--5391Chr08:25233813..25233837 (25 bp)
GAAGCTAACGTACAGCTCCCTCAAT
LOC_Os08g40060
Os.49470.1.S1_at--289--9311Chr08:25233797..25233821 (25 bp)
TCCCTCAATAAGCAGCCGATCTGGT
LOC_Os08g40060
Os.49470.1.S1_at--774--10151Chr08:25233644..25233668 (25 bp)
TATCATTAATTCCTCCATTTTTGCG
LOC_Os08g40060
Os.49470.1.S1_at--1005--1371Chr08:25233553..25233577 (25 bp)
AGACGAACGAACAGATGATCATCAG
LOC_Os08g40060
Os.49470.1.S1_at--1062--1251Chr08:25233465..25233489 (25 bp)
AGATTCAGATCTGTCTCTGCTTCTG
LOC_Os08g40060
Os.49470.1.S1_at--1119--9471Chr08:25233450..25233474 (25 bp)
TCTGCTTCTGTTTCCGGGTCTCTTT
LOC_Os08g40060
Os.49470.1.S1_at--118--10291Chr08:25233428..25233452 (25 bp)
TTTCCTCTCCAGCTGTGTGACCATG
LOC_Os08g40060
Os.49470.1.S1_at--119--7471Chr08:25233414..25233438 (25 bp)
GTGTGACCATGGCAGCTACAGCTGA
LOC_Os08g40060
Os.49470.1.S1_at--898--9911Chr08:25233384..25233408 (25 bp)
TACTGCTACTGCTCACTGTCATCCT
LOC_Os08g40060
Target Sequence 
ACAACTTCGACAATGGCGACGCCGCCGCCGCCGCCAGGCCGGAGCCCTGATCCGATCTCGCCGGCGAAAAACCGAAGCTA
ACGTACAGCTCCCTCAATAAGCAGCCGATCTGGTGATGGTGGTCAGGTATATATATACATATATATAGTACATATATATN
TGTGTGTGATGAACTGATGATGAACATGTCNCAAATGGCCAAGCNAATCAAGATCGGATCATGAACTTNAAGCTGTAGTG
TATATCATTAATTCCTCCATTTTTGCGNTCTTGCCGNTGCTGTNTCTTTNTCTTTCTCTCTTTGATNCTTGGAAATGTAA
ATGTCTTGTAATCAGACGAACGAACAGATGATCATCAGTGGAGAATTAAGAAAGGGTTTCTTGTCATCAGATTCAGATTG
TTTCAGAAAACAAAAACAAAAAGATTCAGATCTGTCTCTGCTTCTGTTTCCGGGTCTCTTTCCTCTCCAGCTGTGTGACC
ATGGCAGCTACAGCTGAGCTACTACTGCTACTGCTCACTGTCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis