Browse Element(s) Details


Os.49481.1.S1_at

Description gb:AK100235.1
DB_XREF= gi:32985444
TID=Os.49481.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023052A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052A05, full insert sequence.
FL= gb:AK100235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g531501/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53090Os.37745.1.S1_at11/111+30839129..30840475Pathogen-related protein, putative, expressed
LOC_Os01g53100OsAffx.25766.2.S1_x_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53100OsAffx.25766.2.S1_at10/111+30843679..30844278Ubiquitin family protein, expressed
LOC_Os01g53110Os.37745.1.S1_at2/111+30847448..30848413Pathogen-related protein, putative
LOC_Os01g53120OsAffx.11581.1.S1_at11/111+30851804..30852380hypothetical protein
LOC_Os01g53130Os.41794.1.S1_at10/111+30852233..30855907Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g53140Os.6679.1.S1_at10/111+30860457..30863593expressed protein
LOC_Os01g53140Os.8190.2.S1_x_at2/111+30860457..30863593expressed protein
LOC_Os01g53150Os.18863.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.52504.1.S1_at11/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53150Os.49481.1.S1_at1/111+30863984..30868719GTP-binding protein, putative, expressed
LOC_Os01g53160Os.55598.1.S1_at11/111+30869648..30870902uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g53170OsAffx.943.1.S1_at11/111+30878472..30880838retrotransposon protein, putative, unclassified
LOC_Os01g53180NANA1+30881193..30881558hypothetical protein
LOC_Os01g53190OsAffx.11582.1.S1_at11/111+30882178..30884632hypothetical protein
LOC_Os01g53200OsAffx.23770.1.S1_at11/111+30888324..30891284flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49481.1.S1_at--570--4571Chr12:26071130..26071154 (25 bp)
GCGCGTCTACATTGATCTGTAAATT
NONE
Os.49481.1.S1_at--816--2871Chr12:26070844..26070867 (24 bp)
AAGGGCATTTGCTTCTTCAGTAACC
NONE
Os.49481.1.S1_at--1122--9051Chr12:26070819..26070843 (25 bp)
TGCATTAAGCTTCCAGTTGCCGTTA
NONE
Os.49481.1.S1_at--206--6771Chr12:26070798..26070822 (25 bp)
GTTACTATTCAGCTCCTCTTGATAA
NONE
Os.49481.1.S1_at--1058--3012Chr04:27584865..27584884 (20 bp)
AATGCTGCTGCTTTGACAGCGTACT
NONE
Os.49481.1.S1_at--888--2151Chr12:26070736..26070760 (25 bp)
ACAGCGTACTGGTCATAGTTCAAAC
NONE
Os.49481.1.S1_at--949--5231Chr12:26070696..26070720 (25 bp)
GAATAATTCATCAAACCTGGTTCCA
NONE
Os.49481.1.S1_at--247--3032Chr01:30868204..30868702 (25 bp)
AATCCCAGTTCCTGTATGTTTGTCT
LOC_Os01g53150
Os.49481.1.S1_at--17--10811Chr12:26070589..26070613 (25 bp)
TTGTCTTGTGCAAACCACTTGAAGA
NONE
Os.49481.1.S1_at--534--191Chr12:26070565..26070589 (25 bp)
ATTTCTTGTCAATGCCAGTGTCGTA
NONE
Os.49481.1.S1_at--284--1111Chr12:26070549..26070573 (25 bp)
AGTGTCGTAGCCCTTGTCAATTGGA
NONE
Target Sequence 
GCGCGTCTACATTGATCTGTAAATTTGACAAAGGGCATTTGCTTCTTCAGTAACCTGCATTAAGCTTCCAGTTGCCGTTA
CTATTCAGCTCCTCTTGATAAGAAACTGAAAGGAGAAACGGCAAATGCTGCTGCTTTGACAGCGTACTGGTCATAGTTCA
AACTCACTAGGTACAGTAGAATAATTCATCAAACCTGGTTCCAAATATTAGTATTTAGTAGTAGTAATAAAAGGCAAAGC
AGCTGCTTCATTGCAGCACCCCACAGAATCCCAGTTCCTGTATGTTTGTCTTGTGCAAACCACTTGAAGATTTCTTGTCA
ATGCCAGTGTCGTAGCCCTTGTCAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis