Browse Element(s) Details


Os.49494.2.A1_at

Description gb:AK101997.1
DB_XREF= gi:32987206
TID=Os.49494.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079K20, full insert sequence.
FL= gb:AK101997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0829011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49494.2.A1_at--769--1571Chr03:4202040..4202064 (25 bp)
AGCTCAGGCTGCTGGTTCGAGCTCA
LOC_Os03g08290
Os.49494.2.A1_at--828--5011Chr03:4202121..4202145 (25 bp)
GCAGGTCACTGAGCCGCACGTCGAG
LOC_Os03g08290
Os.49494.2.A1_at--991--511Chr03:4202188..4202212 (25 bp)
ATCGATCAGGAAGATCATGGCCGCT
LOC_Os03g08290
Os.49494.2.A1_at--330--5991Chr03:4202249..4202273 (25 bp)
GAGACGATGCCTGAAGCGACTGTCA
LOC_Os03g08290
Os.49494.2.A1_at--775--8811Chr03:4202405..4202429 (25 bp)
TGTTGCACAAGAACACGCATCCTGA
LOC_Os03g08290
Os.49494.2.A1_at--917--4972Chr06:21733286..21733308 (23 bp)
GCATCCTGAAAAACCGGCGTTGCCA
NONE
Os.49494.2.A1_at--682--3931Chr03:4202435..4202459 (25 bp)
CGGCGTTGCCACATACTGTGATGAA
LOC_Os03g08290
Os.49494.2.A1_at--303--5571Chr03:4202457..4202481 (25 bp)
GAAAGGTGATCCAACGGTTCCGACG
LOC_Os03g08290
Os.49494.2.A1_at--718--10831Chr03:4202650..4202674 (25 bp)
TTGGATCTGGAGATATAGACACCCC
LOC_Os03g08290
Os.49494.2.A1_at--113--5991Chr03:4202737..4202761 (25 bp)
GAGACTAGCGTTTCTTTTTTGTACG
LOC_Os03g08290
Os.49494.2.A1_at--419--10791Chr03:4202755..4202779 (25 bp)
TTGTACGACCGTACTTCAGTACATG
LOC_Os03g08290
Target Sequence 
AGCTCAGGCTGCTGGTTCGAGCTCAGGCGGTGGTGACCGGAGGCGAGGACGACGACGGCGGCGGCGGCGGCGGCAGGCAA
CGCAGGTCACTGAGCCGCACGTCGAGCTCCACGAATGGCAGAGAGGTGGTGGCCAAGCTGAAGCAGAGATCGATCAGGAA
GATCATGGCCGCTGCTCTCGGTGGCCTCCTGCACCGGCCGAGCTGCAGGGAGACGATGCCTGAAGCGACTGTCAGTGAGA
TTATATGGTCATTGTTGCACAAGAACACGCATCCTGAAAAACCGGCGTTGCCACATACTGTGATGAAAGGTGATCCAACG
GTTCCGACGCCACAGAAGGATAAACAAGAGGGCACCAAATGGATCAGAACAGATTCAGAGTACATTGTGTTGGATCTGGA
GATATAGACACCCCCGGTGGCAGTAAAGAGGCAACAAGAACAATTTCCTGGATTTTTTTTTCTTTTCTTGAGAGAGGAGA
CTAGCGTTTCTTTTTTGTACGACCGTACTTCAGTACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49494.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis