Browse Element(s) Details


Os.49509.1.S1_at

Description gb:AK060208.1
DB_XREF= gi:32970226
TID=Os.49509.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B01, full insert sequence.
FL= gb:AK060208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4462011/11zinc-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g44580Os.28943.1.S1_x_at1/118+27900293..27903491retrotransposon protein, putative, unclassified
LOC_Os08g44590Os.54927.1.S1_at11/118+27910366..27912739oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g44600Os.52290.1.S2_at2/118+27913627..27917536hypothetical protein
LOC_Os08g44610NANA8+27923604..27924038hypothetical protein
LOC_Os08g44620Os.49509.1.S1_at11/118+27926502..27928355zinc-binding family protein, putative, expressed
LOC_Os08g44640Os.7754.1.S1_at10/118+27936457..27941789Serine carboxypeptidase family protein, expressed
LOC_Os08g44650Os.11783.1.S1_at11/118+27942045..27944263J domain protein C21orf55 homolog, putative, expressed
LOC_Os08g44660Os.12324.1.S1_at11/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44660OsAffx.28370.1.S1_x_at3/118+27944685..27946964EF hand family protein, expressed
LOC_Os08g44670OsAffx.6138.1.S1_at10/118+27948536..27949829calreticulin, putative
LOC_Os08g44680Os.7974.1.S1_at11/118+27950488..27951396Photosystem I reaction center subunit II, chloroplast precursor, putative, expressed
LOC_Os08g44690Os.25411.1.A1_at6/118+27952454..27953365transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49509.1.S1_at--302--8711Chr08:27926947..27926971 (25 bp)
TGTCCATCTCAACACCATTGTAAGC
LOC_Os08g44620
Os.49509.1.S1_at--338--1211Chr08:27926877..27926901 (25 bp)
AGTTAAGTTTATTGCCCTATACACA
LOC_Os08g44620
Os.49509.1.S1_at--956--7851Chr08:27926805..27926829 (25 bp)
GGTAGGAGCTCATGTCCATGTCATT
LOC_Os08g44620
Os.49509.1.S1_at--486--7271Chr08:27926792..27926816 (25 bp)
GTCCATGTCATTAGCTTAGATCAAT
LOC_Os08g44620
Os.49509.1.S1_at--1037--10431Chr08:27926777..27926801 (25 bp)
TTAGATCAATCCCTGCTACCTTGTC
LOC_Os08g44620
Os.49509.1.S1_at--45--9971Chr08:27926761..27926785 (25 bp)
TACCTTGTCGTCTTAGGCACTAGCA
LOC_Os08g44620
Os.49509.1.S1_at--397--6571Chr08:27926617..27926641 (25 bp)
GATTCATTCCCACATTGCTGTTACA
LOC_Os08g44620
Os.49509.1.S1_at--554--9851Chr08:27926596..27926620 (25 bp)
TACACCCTCCATGCATGATCATATA
LOC_Os08g44620
Os.49509.1.S1_at--1049--6631Chr08:27926535..27926559 (25 bp)
GTTGTTGTATTGTACGTCCACATTG
LOC_Os08g44620
Os.49509.1.S1_at--987--6991Chr08:27926524..27926548 (25 bp)
GTACGTCCACATTGTTACTCACTAC
LOC_Os08g44620
Os.49509.1.S1_at--599--3711Chr08:27926503..27926527 (25 bp)
CTACCTCACCCTGCTTAAGAATAAA
LOC_Os08g44620
Target Sequence 
TGTCCATCTCAACACCATTGTAAGCCAANCCACCAGAAAACACACATACTACACACACACACACNNNNNNCACACCAGTT
AAGTTTATTGCCCTATACACAAGATACATACACCNATACTTTTTACCCATTCATTCATTCAGTAGGTAGGTAGGAGCTCA
TGTCCATGTCATTAGCTTAGATCAATCCCTGCTACCTTGTCGTCTTAGGCACTAGCAGGAGTACNTTTTTAGAGGATNGA
CTTCTAANTATTAGTCACTATTGATTCTTTTCAAGATTTTGNTTANTTGNATTNGACTNGATGATGATACCGCCTGGNTA
ATTACATTGNTTACAAAATTAGCTGATTCATTCCCACATTGCTGTTACACCCTCCATGCATGATCATATATATACAAGAT
TCCTTGTTATTTAAAAATCATTAAATGTTGTTGTATTGTACGTCCACATTGTTACTCACTACCTCACCCTGCTTAAGAAT
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis