Browse Element(s) Details


Os.4953.1.S1_at

Description gb:AK059040.1
DB_XREF= gi:32969058
TID=Os.4953.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0557A01.33 (P0557A01.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D03, full insert sequence.
FL= gb:AK059040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5808011/11membrane-associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58040OsAffx.30473.1.S1_x_at11/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58040OsAffx.30473.2.S1_x_at9/111+33894503..33896937Photosystem II D2 protein, putative, expressed
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4953.1.S1_at--401--5212Chr01:33923908..33923932 (25 bp)
GAATTCCATTATACCACTGGTGCGA
LOC_Os01g58080
Os.4953.1.S1_at--330--8611Chr01:33923925..33923949 (25 bp)
TGGTGCGACAGAATCGCCAGACCTG
LOC_Os01g58080
Os.4953.1.S1_at--1044--9311Chr01:33923938..33923962 (25 bp)
TCGCCAGACCTGGAGGGATACCATC
LOC_Os01g58080
Os.4953.1.S1_at--575--7651Chr01:33923952..33923976 (25 bp)
GGGATACCATCCCTAACGAGACTGG
LOC_Os01g58080
Os.4953.1.S1_at--168--5611Chr01:33923986..33924010 (25 bp)
GACAATTACATCCATAAGCAGCCAG
LOC_Os01g58080
Os.4953.1.S1_at--25--1511Chr01:33924002..33924026 (25 bp)
AGCAGCCAGATCATAGGCTACTTTG
LOC_Os01g58080
Os.4953.1.S1_at--700--8291Chr01:33924017..33924041 (25 bp)
GGCTACTTTGTTACAGCTACCAGGA
LOC_Os01g58080
Os.4953.1.S1_at--648--4851Chr01:33924032..33924056 (25 bp)
GCTACCAGGACAGTGATTAACATTT
LOC_Os01g58080
Os.4953.1.S1_at--307--7251Chr01:33924072..33924096 (25 bp)
GTCCTCAGTGAACAATTTATTTCGT
LOC_Os01g58080
Os.4953.1.S1_at--435--5971Chr01:33924098..33924122 (25 bp)
GAGAAGACCTCCTGTTGCAGCCAAA
LOC_Os01g58080
Os.4953.1.S1_at--6--10511Chr01:33924112..33924136 (25 bp)
TTGCAGCCAAACTGTATTTTGCCCC
LOC_Os01g58080
Target Sequence 
GAATTCCATTATACCACTGGTGCGACAGAATCGCCAGACCTGGAGGGATACCATCCCTAACGAGACTGGTAAGGTGAGGA
CAATTACATCCATAAGCAGCCAGATCATAGGCTACTTTGTTACAGCTACCAGGACAGTGATTAACATTTGAAAGCACTAG
AAAAGTCCTCAGTGAACAATTTATTTCGTGGAGAAGACCTCCTGTTGCAGCCAAACTGTATTTTGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis