Browse Element(s) Details


Os.49533.1.S1_at

Description gb:AK073526.1
DB_XREF= gi:32983549
TID=Os.49533.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046L10, full insert sequence.
FL= gb:AK105951.1 gb:AK073526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3560011/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein
LOC_Os02g35630OsAffx.12697.1.S1_x_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35630Os.21406.1.A1_at11/112+21419788..21425837ATP-dependent Clp protease ATP-binding subunit ClpX, putative, expressed
LOC_Os02g35640Os.22460.1.S1_at11/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35640OsAffx.12361.1.S1_at6/112+21426356..21429114pRGR1, putative, expressed
LOC_Os02g35650OsAffx.12362.1.S1_at11/112+21429533..21429931Late embryogenesis abundant protein
LOC_Os02g35660OsAffx.12363.1.S1_at10/112+21430680..21433485Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49533.1.S1_at--324--3031Chr02:21410740..21410764 (25 bp)
AATCCAATTCTAACAGCAAGCCTGC
LOC_Os02g35600
Os.49533.1.S1_at--665--7991Chr02:21410816..21410840 (25 bp)
GGATGAGGACCAGGCTTACATGTGT
LOC_Os02g35600
Os.49533.1.S1_at--362--3491Chr02:21410826..21410850 (25 bp)
CAGGCTTACATGTGTGGCGCTTGCG
LOC_Os02g35600
Os.49533.1.S1_at--949--4551Chr02:21410842..21410866 (25 bp)
GCGCTTGCGGAGAGACTTACGCGAA
LOC_Os02g35600
Os.49533.1.S1_at--73--3671Chr02:21410857..21410881 (25 bp)
CTTACGCGAACGGTGAGTTCTGGAT
LOC_Os02g35600
Os.49533.1.S1_at--442--7911Chr02:21410905..21410929 (25 bp)
GGTTCCATGGCAAGTGCGTTCGGAT
LOC_Os02g35600
Os.49533.1.S1_at--1146--9111Chr02:21410919..21410943 (25 bp)
TGCGTTCGGATCACCCCTGCGAAGG
LOC_Os02g35600
Os.49533.1.S1_at--422--9151Chr02:21410936..21410960 (25 bp)
TGCGAAGGCAGAGCACATCAAGCAG
LOC_Os02g35600
Os.49533.1.S1_at--764--5231Chr02:21410997..21411021 (25 bp)
GAATGACCACGGGAGGCTCCCGGTT
LOC_Os02g35600
Os.49533.1.S1_at--1049--8311Chr02:21411011..21411035 (25 bp)
GGCTCCCGGTTGACATGTTTTAGAA
LOC_Os02g35600
Os.49533.1.S1_at--1126--5331Chr02:21411051..21411075 (25 bp)
GAAGAGGCGGAGAACCGCTTCACCC
LOC_Os02g35600
Target Sequence 
AATCCAATTCTAACAGCAAGCCTGCAAAGCCACCTCAGCCAAAAGATGAGGAAGACAGCGGCCCGGAAGGCACAGAGGAT
GAGGACCAGGCTTACATGTGTGGCGCTTGCGGAGAGACTTACGCGAACGGTGAGTTCTGGATCTGCTGCGACGTCTGCGA
GAAGTGGTTCCATGGCAAGTGCGTTCGGATCACCCCTGCGAAGGCAGAGCACATCAAGCAGTACAAGTGCCCTGGCTGCA
GCAGCAAGAGGAGCCGAGAATGACCACGGGAGGCTCCCGGTTGACATGTTTTAGAATCGTTAGGAATTGGTGAAGAGGCG
GAGAACCGCTTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis