Browse Element(s) Details


Os.49536.1.S1_at

Description gb:AK105852.1
DB_XREF= gi:32991061
TID=Os.49536.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-G10, full insert sequence.
FL= gb:AK105852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0995011/11Acyl-desaturase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed
LOC_Os08g09950Os.49536.1.S1_at11/118+5745325..5747403Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os08g09960OsAffx.29126.1.S1_at11/118+5748821..5749249hypothetical protein
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0006952biological_processdefense response
GO:0008610biological_processlipid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0042742biological_processdefense response to bacteria
GO:0004768molecular_functionstearoyl-CoA 9-desaturase activity
GO:0045300molecular_functionacyl-[acyl-carrier protein] desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49536.1.S1_at--523--1891Chr08:5745962..5745986 (25 bp)
ACGTACACGGTGTCGGACTACTGCT
LOC_Os08g09950
Os.49536.1.S1_at--626--1451Chr08:5745784..5745808 (25 bp)
AGAAGAAGCCCATCAGCATCCCGAT
LOC_Os08g09950
Os.49536.1.S1_at--862--6491Chr08:5745746..5745770 (25 bp)
GATAGGCACGTCAGTGTCATGCTGC
LOC_Os08g09950
Os.49536.1.S1_at--664--6591Chr08:5745707..5745731 (25 bp)
GTTGATTTAATTACCCACTGGAAGG
LOC_Os08g09950
Os.49536.1.S1_at--261--10511Chr08:5745678..5745702 (25 bp)
TTAATTATGCTATGCTCGTGTTCAT
LOC_Os08g09950
Os.49536.1.S1_at--978--10531Chr08:5745658..5745682 (25 bp)
TTCATATTTCATAAACGGGCCGTTA
LOC_Os08g09950
Os.49536.1.S1_at--552--1331Chr08:5745625..5745649 (25 bp)
AGAGGTCCGCTAGATTTGAGCAGTA
LOC_Os08g09950
Os.49536.1.S1_at--1041--91Chr08:5745600..5745624 (25 bp)
ATTCGTAGGGTTATCTTGCTCTGGT
LOC_Os08g09950
Os.49536.1.S1_at--567--4811Chr08:5745583..5745607 (25 bp)
GCTCTGGTAATTGTATGCGTGGTAA
LOC_Os08g09950
Os.49536.1.S1_at--149--7511Chr08:5745565..5745589 (25 bp)
GTGGTAAGACTTGCTATTCCAGTTA
LOC_Os08g09950
Os.49536.1.S1_at--1003--10831Chr08:5745531..5745555 (25 bp)
TTGTGTCTGTTTATGCATGGCTTAA
LOC_Os08g09950
Target Sequence 
ACGTACACGGTGTCGGACTACTGCTCCATCGTCGAGCACCTGGTGCGGGANTGGCGCGTGGAGGAGCTCGCGGCGGGGCT
CTCCGGCGAAGGGCGGCGCGCGCGGGACTACGTGTGCGAGCTGCCGCAGAAGATCCGGAGGATGAAGGAGAAGGCCCATG
AGAGGGCGGTCAAGGCCCAGAAGAAGCCCATCAGCATCCCGATTAATTGGATATTTGATAGGCACGTCAGTGTCATGCTG
CCCTAATTTAATTAAGTTGATTTAATTACCCACTGGAAGGGTAATTAATTATGCTATGCTCGTGTTCATATTTCATAAAC
GGGCCGTTACCAGAAGTAGAGGTCCGCTAGATTTGAGCAGTAATTCGTAGGGTTATCTTGCTCTGGTAATTGTATGCGTG
GTAAGACTTGCTATTCCAGTTAATTGTTAATTTGTGTCTGTTTATGCATGGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis