Browse Element(s) Details


Os.49570.1.S1_at

Description gb:AK101598.1
DB_XREF= gi:32986807
TID=Os.49570.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051H11, full insert sequence.
FL= gb:AK101598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4723010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47180Os.26575.1.S1_at8/112+28797042..28800123Cell division cycle protein 20 homolog, putative, expressed
LOC_Os02g47190Os.24699.1.S1_at11/112+28803051..28806106Calcium-dependent protein kinase substrate protein, putative, expressed
LOC_Os02g47200OsAffx.10756.1.S1_x_at11/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47200OsAffx.8513.1.S1_s_at1/112+28806816..28808209transposon protein, putative, unclassified, expressed
LOC_Os02g47210Os.52569.1.S1_at11/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47210OsAffx.14178.1.S1_x_at1/112+28809597..28812822amino acid permease family protein, putative, expressed
LOC_Os02g47220Os.12650.2.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47220Os.12650.1.S1_a_at11/112+28814992..28820722Protein kinase domain containing protein, expressed
LOC_Os02g47230Os.49570.1.S1_at10/112+28820870..28827763expressed protein
LOC_Os02g47230Os.51461.1.S1_at1/112+28820870..28827763expressed protein
LOC_Os02g47240OsAffx.24762.1.S1_at11/112+28828065..28828475hypothetical protein
LOC_Os02g47250NANA2+28829205..28832269hypothetical protein
LOC_Os02g47260NANA2+28832951..28836242transposon protein, putative, unclassified
LOC_Os02g47270OsAffx.20387.1.S1_x_at1/112+28838828..28843028transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49570.1.S1_at--876--1871Chr02:28821499..28821523 (25 bp)
ACGAGGCGTCCGTGTCCATCAGCAA
LOC_Os02g47230
Os.49570.1.S1_at--1037--331Chr02:28821175..28821199 (25 bp)
ATACACGCGCAGTATCTGTGAGCTA
LOC_Os02g47230
Os.49570.1.S1_at--49--491Chr02:28821162..28821186 (25 bp)
ATCTGTGAGCTAACGCGAGACCCAT
LOC_Os02g47230
Os.49570.1.S1_at--309--5391Chr02:28821107..28821131 (25 bp)
GAAGCTAACGCGTCGCCGGGAAGAA
LOC_Os02g47230
Os.49570.1.S1_at--273--6291Chr02:28821069..28821093 (25 bp)
GATGATACTACTACTTTGCCGCTGC
LOC_Os02g47230
Os.49570.1.S1_at--1013--4211Chr02:28821051..28821075 (25 bp)
CCGCTGCTACGGTTAGTGCTACTAG
LOC_Os02g47230
Os.49570.1.S1_at--853--911Chr02:28820966..28820990 (25 bp)
AGGCTCAGTCAAGCTGCTACTCTTG
LOC_Os02g47230
Os.49570.1.S1_at--366--4851Chr02:28820951..28820975 (25 bp)
GCTACTCTTGTTAACTGACCACTTT
LOC_Os02g47230
Os.49570.1.S1_at--610--8551Chr02:28820927..28820951 (25 bp)
TGGTCTTCCGTTTGTAACCTTTATG
LOC_Os02g47230
Os.49570.1.S1_at--203--8511Chr02:28820904..28820928 (25 bp)
TGGACAGGGTGTTCGTTTAATTCGT
LOC_Os02g47230
Os.49570.1.S1_at--370--811Chr02:28820870..28820893 (24 bp)
ATGGTTTCATGTGATCCTCGACGGC
NONE
Target Sequence 
ACGAGGCGTCCGTGTCCATCAGCAACGCGAGCGACCTGGAGGCCACGGAGTGGGTGGAGCAGGACGAGCCTGGGGTGTCC
ATCACCATCCGCGAGTTCGGCGACGGCACCCGCGAGCTCCGCCGCGTCCGGTTCAGCCGCGAGAGATTTGGCGAGGAGCG
GGCCAAGGTGTGGTGGGAGCAGAACCGGGACCGGATACACGCGCAGTATCTGTGAGCTAACGCGAGACCCATCGTTGATG
AGAGTGAAGTGATACTGTGACAGAAGCTAACGCGTCGCCGGGAAGAATAGTTAAGAGTGTGATGATACTACTACTTTGCC
GCTGCTACGGTTAGTGCTACTAGGTTTTTTTTACAGGGTGAATATAGGATGAGGGGGAAGGATGCTGTGGTCTGAGAAGC
AGCAGGCTCAGTCAAGCTGCTACTCTTGTTAACTGACCACTTTGGTCTTCCGTTTGTAACCTTTATGGACAGGGTGTTCG
TTTAATTCGTTTGTTTTAGCATGGTTTCATGTGATCCTCGACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis