Browse Element(s) Details


Os.49583.1.S1_at

Description gb:AK063057.1
DB_XREF= gi:32973075
TID=Os.49583.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F05, full insert sequence.
FL= gb:AK063057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15040Os.26769.1.S1_at11/113+8191551..8197199FAR1 family protein, expressed
LOC_Os03g15050Os.12699.1.S1_at11/113+8197917..8203180Phosphoenolpyruvate carboxykinase, putative, expressed
LOC_Os03g15060NANA3+8206005..8208829hypothetical protein
LOC_Os03g15070OsAffx.3247.1.S1_at10/113+8216807..8219738hypothetical protein
LOC_Os03g15080Os.49583.1.S1_at11/113+8220585..8221555expressed protein
LOC_Os03g15090OsAffx.25091.1.S1_at11/113+8226667..8227302hypothetical protein
LOC_Os03g15100NANA3+8227607..8228455hypothetical protein
LOC_Os03g15110Os.27141.1.S1_at11/113+8230197..8232456expressed protein
LOC_Os03g15110Os.57365.1.S1_at10/113+8230197..8232456expressed protein
LOC_Os03g15110OsAffx.28452.1.S1_x_at7/113+8230197..8232456expressed protein
LOC_Os03g15120Os.33841.1.A1_at10/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15120OsAffx.13488.1.S1_at2/113+8234542..8239849Imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed
LOC_Os03g15130OsAffx.25093.1.S1_at11/113+8244399..8244707hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49583.1.S1_at--905--3471Chr03:8221122..8221146 (25 bp)
CAGGTACACGTACTGTCCACAGCTA
LOC_Os03g15080
Os.49583.1.S1_at--842--7271Chr03:8221108..8221132 (25 bp)
GTCCACAGCTACGTACATGCATCGG
LOC_Os03g15080
Os.49583.1.S1_at--997--3511Chr03:8221093..8221117 (25 bp)
CATGCATCGGAAGGGCTCGACGACA
LOC_Os03g15080
Os.49583.1.S1_at--398--5211Chr03:8221062..8221086 (25 bp)
GAATTGAACGGCACGCGGCTGTGTA
LOC_Os03g15080
Os.49583.1.S1_at--1044--9371Chr03:8220986..8221010 (25 bp)
TCGATGGTGATGACGCTGAGCCTGC
LOC_Os03g15080
Os.49583.1.S1_at--386--8611Chr03:8220898..8220922 (25 bp)
TGGTGCTCACGTTCATCGTGTCGCA
LOC_Os03g15080
Os.49583.1.S1_at--82--2491Chr03:8220749..8220773 (25 bp)
AACAGCTGAAGAAACCGCGCGCACG
LOC_Os03g15080
Os.49583.1.S1_at--575--9991Chr03:8220700..8220724 (25 bp)
TAGCCTGTTGCGATTTTCTCTCTCA
LOC_Os03g15080
Os.49583.1.S1_at--770--171Chr03:8220688..8220712 (25 bp)
ATTTTCTCTCTCACTAATCGACGAT
LOC_Os03g15080
Os.49583.1.S1_at--291--3051Chr03:8220673..8220697 (25 bp)
AATCGACGATTCGTGAACGCTCCTG
LOC_Os03g15080
Os.49583.1.S1_at--21--2611Chr03:8220658..8220682 (25 bp)
AACGCTCCTGTGCTTACTTGATGGA
LOC_Os03g15080
Target Sequence 
CAGGTACACGTACTGTCCACAGCTACGTACATGCATCGGAAGGGCTCGACGACAACGATCGAATTGAACGGCACGCGGCT
GTGTAATGGTCAGGTACTGGGTGTTCATGGGGGCGAGCTGGATGGGGTTCGCGAGCTCGATGGTGATGACGCTGAGCCTG
CTGGTGCGGATGCCCGTGGACTCGCGCAACGTCCGGTGGTCGTTCGCGGTGGCGTACTCCACGCTGGTGCTCACGTTCAT
CGTGTCGCAGCCCAGGACGCACCTGTCGCTGGACATCCTCGTCTGGGTCGCCGTCCTCGCCTTCCTCTGGTTCACCATCA
GCCTCCGCCCGGAGCGCCGCGCGAAAATCGCCCAGGCGATCTGCTGCGGCCACAACAGCTGAAGAAACCGCGCGCACGGC
GCACCACCACTGATTCCTTCATTAGCCTGTTGCGATTTTCTCTCTCACTAATCGACGATTCGTGAACGCTCCTGTGCTTA
CTTGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis