Browse Element(s) Details


Os.49604.1.S1_at

Description gb:AK065138.1
DB_XREF= gi:32975156
TID=Os.49604.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002A10, full insert sequence.
FL= gb:AK065138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4655011/11Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46480Os.12551.1.S1_s_at11/115+26844337..26845612Late embryogenesis abundant protein, expressed
LOC_Os05g46490Os.14093.1.S1_at11/115+26847829..26852599mov34 family protein, putative, expressed
LOC_Os05g46500OsAffx.15128.1.S1_x_at11/115+26854087..26854760expressed protein
LOC_Os05g46500Os.55373.1.S1_at5/115+26854087..26854760expressed protein
LOC_Os05g46510Os.9759.1.S1_x_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46510Os.9759.2.S1_at11/115+26856929..26859928Polygalacturonase family protein, expressed
LOC_Os05g46520Os.5687.1.S1_at10/115+26860109..26862543Polygalacturonase family protein, expressed
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49604.1.S1_at--1058--5931Chr05:26869977..26870001 (25 bp)
GAGCAGAATTTAGCCTTCCAAGCAT
LOC_Os05g46550
Os.49604.1.S1_at--757--8892Chr11:20204343..20204437 (24 bp)
TGAGATACCGTATTTTACCGTGTCG
NONE
Os.49604.1.S1_at--443--2791Chr05:26869751..26869775 (25 bp)
AAGAGTGGATATCAGGCCCTTCCTT
LOC_Os05g46550
Os.49604.1.S1_at--738--4311Chr05:26869734..26869758 (25 bp)
CCTTCCTTGGGTTCGATACATCACA
LOC_Os05g46550
Os.49604.1.S1_at--619--171Chr05:26869677..26869701 (25 bp)
ATTTTCACACCTCTGGTTGCTGGAA
LOC_Os05g46550
Os.49604.1.S1_at--624--5791Chr05:26869594..26869618 (25 bp)
GACGAACATTCACTCGCTGGATGGG
LOC_Os05g46550
Os.49604.1.S1_at--317--4771Chr05:26869528..26869552 (25 bp)
GCTGCTGACAGCCATGTTATTGATT
LOC_Os05g46550
Os.49604.1.S1_at--15--6551Chr05:26869507..26869531 (25 bp)
GATTTTACCCATGTTTTGCTGCAAG
LOC_Os05g46550
Os.49604.1.S1_at--449--6851Chr05:26869483..26869507 (25 bp)
GTTTGTCATCAGTATAGGTCCCCAG
LOC_Os05g46550
Os.49604.1.S1_at--1038--431Chr05:26869457..26869481 (25 bp)
ATCTTCATTTCTTTTCTGCGTTTTG
LOC_Os05g46550
Os.49604.1.S1_at--1085--9971Chr05:26869320..26869344 (25 bp)
TACCACTATGTATATCTCTCCTTTC
LOC_Os05g46550
Target Sequence 
GAGCAGAATTTAGCCTTCCAAGCATAACATCAGAAGATGGAATGCCTGAAAAGAAGGCTCCGATACGTGTGAAATTTGAG
ATACCGTATTTTACCGTGTCGGGTATTCAGGTTCGCTATCTGAAAATCATCGAAAAGAGTGGATATCAGGCCCTTCCTTG
GGTTCGATACATCACAATGGCTGGTGAATATGAGTTGAGACTCATCTGATTTTCACACCTCTGGTTGCTGGAAGAAATGA
TTGATTTCCTGGAGTCCAAGCCTCCCAGGGGGCGTTTACAGAGGCAACTCAGACGAACATTCACTCGCTGGATGGGCTCC
CGAGGCTTCATGGTTCCATCTCGCGCAAGNGAGGAAAGCTGCTGACAGCCATGTTATTGATTTTACCCATGTTTTGCTGC
AAGTTTGTCATCAGTATAGGTCCCCAGAATCTTCATTTCTTTTCTGCGTTTTGTTCCCAGNCGATATCTCTTGTATCANT
GTNAAANTNANTTAATCAACTGATGTCACAAGCTTGGATTTTTTTTTGTATCTCCTGTACCTAATTAACAAGCTTGGATC
ATGTATACCACTATGTATATCTCTCCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis