Browse Element(s) Details


Os.49607.1.S1_at

Description gb:AK062839.1
DB_XREF= gi:32972857
TID=Os.49607.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H03, full insert sequence.
FL= gb:AK062839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0988011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09910Os.49776.1.S1_at11/113+4915589..4920154Aspartate aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0030198biological_processextracellular matrix organization and biogenesis
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0005201molecular_functionextracellular matrix structural constituent
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49607.1.S1_at--496--7031Chr03:4892911..4892935 (25 bp)
GTACACCATCTACGCGACGGTGGCG
LOC_Os03g09880
Os.49607.1.S1_at--1000--8151Chr03:4892943..4892967 (25 bp)
GGAACTCGACGACGCAGAACATGGT
LOC_Os03g09880
Os.49607.1.S1_at--809--7551Chr03:4892994..4893018 (25 bp)
GGGCCATAGCGATGCACCCGACGAC
LOC_Os03g09880
Os.49607.1.S1_at--32--7571Chr03:4893021..4893045 (25 bp)
GGGCGAACCTGAGGAGCACCAAGAA
LOC_Os03g09880
Os.49607.1.S1_at--97--2751Chr03:4893041..4893065 (25 bp)
AAGAAGCACGACTTCACGTCTTGAT
LOC_Os03g09880
Os.49607.1.S1_at--997--1851Chr03:4893048..4893072 (25 bp)
ACGACTTCACGTCTTGATGCGTAGT
LOC_Os03g09880
Os.49607.1.S1_at--988--3611Chr03:4893060..4893084 (25 bp)
CTTGATGCGTAGTAGGCTTAGGAAT
LOC_Os03g09880
Os.49607.1.S1_at--758--10412Chr03:4893096..4893120 (25 bp)
TTATCATTGCCATACCATACAGCAT
LOC_Os03g09880
Os.49607.1.S1_at--1012--331Chr03:4893112..4893136 (25 bp)
ATACAGCATATGTTTCTGATGTTGT
LOC_Os03g09880
Os.49607.1.S1_at--333--3871Chr03:4893127..4893151 (25 bp)
CTGATGTTGTTTGCTATCGGTTTTT
LOC_Os03g09880
Os.49607.1.S1_at--308--8771Chr03:4893134..4893158 (25 bp)
TGTTTGCTATCGGTTTTTATACTAA
LOC_Os03g09880
Target Sequence 
GTACACCATCTACGCGACGGTGGCGCTGCCGGGGAACTCGACGACGCAGAACATGGTGTGGCAGGCCGGGCCGGTCAGGG
GAGGGGCCATAGCGATGCACCCGACGACGGGGGCGAACCTGAGGAGCACCAAGAAGCACGACTTCACGTCTTGATGCGTA
GTAGGCTTAGGAATAAGCATTATTATTATCATTGCCATACCATACAGCATATGTTTCTGATGTTGTTTGCTATCGGTTTT
TATACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis