Browse Element(s) Details


Os.49630.1.A1_at

Description gb:AK069350.1
DB_XREF= gi:32979374
TID=Os.49630.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014M09, full insert sequence.
FL= gb:AK069350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g360008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35960Os.52975.1.S1_at11/119+20715932..20720655RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os09g35970Os.17852.1.S1_at10/119+20724416..207274876-phosphogluconolactonase family protein, expressed
LOC_Os09g35980Os.52276.1.S1_at11/119+20731108..20734247expressed protein
LOC_Os09g35990OsAffx.18003.1.S1_at11/119+20736566..20741141expressed protein
LOC_Os09g36000Os.49630.1.A1_at8/119+20740993..20742395expressed protein
LOC_Os09g36010OsAffx.30146.2.S1_x_at11/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.1.S1_s_at8/119+20742675..20743856hypothetical protein
LOC_Os09g36010OsAffx.30146.3.S1_at1/119+20742675..20743856hypothetical protein
LOC_Os09g36020OsAffx.31478.1.S1_at11/119+20744598..20748451EAP30 family protein, expressed
LOC_Os09g36030Os.22608.1.S1_s_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36030Os.22608.1.S1_at11/119+20749634..20750983Aldolase, putative, expressed
LOC_Os09g36040Os.6854.1.S1_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36040OsAffx.18004.1.S1_x_at11/119+20751248..20754166Rhodanese-like domain containing protein, expressed
LOC_Os09g36050OsAffx.6490.1.S1_at11/119+20756459..20756899hypothetical protein
LOC_Os09g36060Os.54812.1.S1_at11/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed
LOC_Os09g36060OsAffx.9743.1.S1_x_at1/119+20763721..20768090Endoglucanase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49630.1.A1_at--201--4671Chr09:20741443..20741467 (25 bp)
GCGTGTTCCGTTGGGCATCTGAGAA
LOC_Os09g36000
Os.49630.1.A1_at--1028--4671Chr09:20741385..20741409 (25 bp)
GCGGTCGCTGTTTCTTGGCTTGGAT
LOC_Os09g36000
Os.49630.1.A1_at--745--4931Chr09:20741368..20741392 (25 bp)
GCTTGGATGGATTCGCAGCTTGCGT
LOC_Os09g36000
Os.49630.1.A1_at--642--9071Chr09:20741312..20741336 (25 bp)
TGCTTATATGCAGCTGGGCGACGCT
LOC_Os09g36000
Os.49630.1.A1_at--874--7532Chr11:26601990..26602014 (25 bp)
GTGGCATGAGTATTCCTTGGCTGAT
NONE
Os.49630.1.A1_at--1083--3851Chr09:20741260..20741284 (25 bp)
CTGATGGAACCTGTGATGTCTGCAA
LOC_Os09g36000
Os.49630.1.A1_at--11--772Chr11:26602025..26602049 (25 bp)
ATGTCTGCAATGCTGACTATCCAGG
NONE
Os.49630.1.A1_at--357--1072Chr11:26602131..26602155 (25 bp)
AGGGTTCATCCTAGATCAATGTTGA
NONE
Os.49630.1.A1_at--472--1552Chr11:26602212..26602236 (25 bp)
AGCTTGCTTACTAGGTCATTTATGT
NONE
Os.49630.1.A1_at--1140--7012Chr11:26602262..26602286 (25 bp)
GTACTTGCATCTTATTCGACCAGTC
NONE
Os.49630.1.A1_at--93--9751Chr11:26602349..26602373 (25 bp)
TAATTTTGTTCCCAGCATTGCTTTA
NONE
Target Sequence 
GCGTGTTCCGTTGGGCATCTGAGAAAAGGAAGTGGGAGATGATCACCAACTTGGGCGGGCGGTCGCTGTTTCTTGGCTTG
GATGGATTCGCAGCTTGCGTTGATCAAGATCATCCAGGGGTTCGAGGGGATTGCTTATATGCAGCTGGGCGACGCTTGGG
TGAGTGGCATGAGTATTCCTTGGCTGATGGAACCTGTGATGTCTGCAATGCTGACTATCCAGGCNCNCCACCCCTGAACN
AACAGTTCACTNATCAGACCATCAGTTTGGATCTTNCCCAGCTTGTGNTGATGCAAGCCTGAGNAGGGTTCATCCTAGAT
CAATGTTGAAGNCCTATTGCTCAGTTGCTCACANGAGNANAAAAGAATGGTAATGCTTGATCANTAGCTTGCTTACTAGG
TCATTTATGTAAACAATATATTCATACGGNGATCAGTACTTGCATCTTATTCGACCAGTCAATTGTTGTTTTGGTCGATA
TAGTGAATACTTTTCCTTAGGATTTTGACCACAGGAGCAAAATAATTTTGTTCCCAGCATTGCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49630.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis