Browse Element(s) Details


Os.49634.1.S1_at

Description gb:AK120226.1
DB_XREF= gi:37989849
TID=Os.49634.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042E04, full insert sequence.
FL= gb:AK120226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5551011/11Dynein light chain type 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49634.1.S1_at--774--5131Chr01:32309047..32309071 (25 bp)
GCAAAGTTCTTGTTTTCAGTTTTCT
LOC_Os01g55510
Os.49634.1.S1_at--443--2832Chr01:32309050..32309074 (25 bp)
AAGTTCTTGTTTTCAGTTTTCTGCA
LOC_Os01g55510
Os.49634.1.S1_at--1129--10791Chr01:32309056..32309080 (25 bp)
TTGTTTTCAGTTTTCTGCATTCATC
LOC_Os01g55510
Os.49634.1.S1_at--1037--5511Chr01:32309082..32309106 (25 bp)
GAAAAGACTGAAATCTGAGACCGTA
LOC_Os01g55510
Os.49634.1.S1_at--311--5731Chr01:32309087..32309111 (25 bp)
GACTGAAATCTGAGACCGTAGATCA
LOC_Os01g55510
Os.49634.1.S1_at--488--5991Chr01:32309098..32309122 (25 bp)
GAGACCGTAGATCAATCAACCTGAA
LOC_Os01g55510
Os.49634.1.S1_at--329--6451Chr01:32309107..32309131 (25 bp)
GATCAATCAACCTGAATTTCACCCC
LOC_Os01g55510
Os.49634.1.S1_at--871--3151Chr01:32309110..32309134 (25 bp)
CAATCAACCTGAATTTCACCCCTGG
LOC_Os01g55510
Os.49634.1.S1_at--1086--9711Chr01:32309113..32309137 (25 bp)
TCAACCTGAATTTCACCCCTGGCAA
LOC_Os01g55510
Os.49634.1.S1_at--1076--8991Chr01:32309119..32309143 (25 bp)
TGAATTTCACCCCTGGCAACACTTG
LOC_Os01g55510
Os.49634.1.S1_at--65--10531Chr01:32309124..32309148 (25 bp)
TTCACCCCTGGCAACACTTGGATTG
LOC_Os01g55510
Target Sequence 
GCAAAGTTCTTGTTTTCAGTTTTCTGCATTCATCTGAAAAGACTGAAATCTGAGACCGTAGATCAATCAACCTGAATTTC
ACCCCTGGCAACACTTGGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis